[PyMOL] connect atoms

[Florian S. <fl...@cr...>]

Dear all,

I am trying to connect to atoms (Ctrl+shift selection and then Ctrl+T). =
They are in the same molecule and in the same chain. However, the =
connection is between a the carbonly carbon of  a Gly and an oxygen atom =
of a segment which I called SEG. This is because the protein undergoes a =
backbone rearrangement, forming an ester. Anyways, I always get the =
error message: "Editor error: Invalid selections, requires two bonded =
atoms in the same moilecule". As I said, the atoms should be in the same =
molecule.


Does anyone know a way to connect these atoms? Also it would in general =
possibly be nice to be able to connect atoms which are not in the same =
molecule (covelently bound ligands etc.)

Thank you,

Florian

----------------------------------
Florian Schmitzberger
Department of Biochemistry
University of Cambridge
80 Tennis Court Road
CB2 1GA Cambridge
Tel: +44 1223 766029