RE: [PyMOL] moving one segment relative to the rest

[DeLano, W. <wa...@su...>]

Shohei,

The easiest way to do this is to split the objects and then use the =
rotate command.

# save as a ".pml" file...

load 1FJ1.pdb

# split PDB file

create anti=3D(chain F)=20
create fab=3D(chain A,B)

# delete original object

delete 1FJ1

# color objects

color green,fab
color pink,anti

# color interface

select inter =3D (byres ((fab within 5 of anti)\
   or (anti within 5 of fab)))

color yellow,inter

# splay apart

orient
origin fab
rotate y,60,fab
origin anti
rotate y,-60, anti

# zoom interface region

zoom inter
show sph,inter
disable inter

-----Original Message-----
From: Shohei Koide [mailto:sk...@uc...]
Sent: Monday, September 30, 2002 12:14 PM
To: pym...@li...
Subject: [PyMOL] moving one segment relative to the rest


Hello,

I am wondering if one can move one segment (in my case, an antigen=20
protein) relative to the rest of the complex (antibody) using PyMOL.=20
So far I have only been able to translate/rotate the entire complex.=20
I would like to manually "undock" the complex for an illustration=20
purpose.

Thanks.

Shohei Koide


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