[PyMOL] Compile Errors on SVN 4111

[Matthew B. <mp...@pi...>]

Hi,
I'm getting compile errors on the latest SVN build (4111).
Any help would be appreciated.

Thanks,
Matt Baumgartner

$ sudo python setup.py build -j 1
fatal: Not a git repository (or any parent up to mount point /home)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
running build
running build_py
running build_ext
building 'pymol._cmd' extension
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv 
-O2 -Wall -Wstrict-prototypes -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE 
-D_PYMOL_OPENGL_SHADERS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE 
-DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 
-Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated 
-Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src 
-I/usr/local/lib/python2.7/dist-packages/numpy/core/include 
-I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c 
layer0/Util.cpp -o build/temp.linux-x86_64-2.7/layer0/Util.o 
-Werror=implicit-function-declaration 
-Werror=declaration-after-statement -Wno-write-strings 
-Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math 
-funroll-loops -O3 -fcommon
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for 
C/ObjC but not for C++ [enabled by default]
x86_64-linux-gnu-gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv 
-O2 -Wall -Wstrict-prototypes -fPIC -D_PYMOL_LIBPNG -D_PYMOL_INLINE 
-D_PYMOL_OPENGL_SHADERS -D_PYMOL_VMD_PLUGINS -D_PYMOL_FREETYPE 
-DNO_MMLIBS -D_PYMOL_NUMPY -Iov/src -Ilayer0 -Ilayer1 -Ilayer2 -Ilayer3 
-Ilayer4 -Ilayer5 -Imodules/cealign/src -Ibuild/generated 
-Icontrib/uiuc/plugins/include -Icontrib/uiuc/plugins/molfile_plugin/src 
-I/usr/local/lib/python2.7/dist-packages/numpy/core/include 
-I/usr/include -I/usr/include/freetype2 -I/usr/include/python2.7 -c 
layer0/Crystal.cpp -o build/temp.linux-x86_64-2.7/layer0/Crystal.o 
-Werror=implicit-function-declaration 
-Werror=declaration-after-statement -Wno-write-strings 
-Wno-unused-function -Wno-empty-body -Wno-char-subscripts -ffast-math 
-funroll-loops -O3 -fcommon
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for 
C/ObjC but not for C++ [enabled by default]
In file included from layer0/Crystal.cpp:30:0:
layer1/PConv.h: In function ‘PyObject* PConvToPyObject(const std::set<T>&)’:
layer1/PConv.h:236:8: warning: ‘auto’ changes meaning in C++11; please 
remove it [-Wc++0x-compat]
    for (auto it = v.begin(); it != v.end(); ++it) {
         ^
layer1/PConv.h:236:13: error: ‘it’ does not name a type
    for (auto it = v.begin(); it != v.end(); ++it) {
              ^
layer1/PConv.h:236:29: error: expected ‘;’ before ‘it’
    for (auto it = v.begin(); it != v.end(); ++it) {
                              ^
layer1/PConv.h:236:29: error: ‘it’ was not declared in this scope
layer1/PConv.h: In function ‘PyObject* PConvToPyObject(const std::map<K, 
V>&)’:
layer1/PConv.h:253:8: warning: ‘auto’ changes meaning in C++11; please 
remove it [-Wc++0x-compat]
    for (auto it = v.begin(); it != v.end(); ++it) {
         ^
layer1/PConv.h:253:13: error: ‘it’ does not name a type
    for (auto it = v.begin(); it != v.end(); ++it) {
              ^
layer1/PConv.h:253:29: error: expected ‘;’ before ‘it’
    for (auto it = v.begin(); it != v.end(); ++it) {
                              ^
layer1/PConv.h:253:29: error: ‘it’ was not declared in this scope
error: command 'x86_64-linux-gnu-gcc' failed with exit status 1