From: Spencer B. <sb...@uc...> - 2014-12-03 11:51:17
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PyMOL includes Biopython, so I would just use their sequence aligner. For instance: from Bio import pairwise2 alignments = pairwise2.align.globalxx("ACCGT", "ACG") See http://biopython.org/DIST/docs/api/Bio.pairwise2-pysrc.html -Spencer On Wed, Dec 3, 2014 at 9:33 AM, Jordan Willis <jwi...@gm...> wrote: > Hi, > > I know Pymol has a built-in sequence alignment function that ‘align’ uses > before it does alignment. I was wondering how one could access this > function generically for any given strings. I wanted to use this in a > module and don’t want to rely on importing alignment modules from other > packages if I don’t have to. > > -- > Jordan R. Willis, Ph.D. > > Research Associate @Schief Lab > The Scripps Research Institute > 10550 N. Torrey Pines Rd. > IMM Building - Room 217C > La Jolla, CA 92037 USA > Phone: 1-858-784-1000 ext: 43377 > > > > ------------------------------------------------------------------------------ > Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server > from Actuate! Instantly Supercharge Your Business Reports and Dashboards > with Interactivity, Sharing, Native Excel Exports, App Integration & more > Get technology previously reserved for billion-dollar corporations, FREE > > http://pubads.g.doubleclick.net/gampad/clk?id=164703151&iu=/4140/ostg.clktrk > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > |