From: Matzov D. <mat...@we...> - 2014-01-09 21:27:53
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I'm trying to use the script that is available on pymolwiki for colouring residues according to conservation. It wasn't very clear to me so I tried to do the given example: reinitialize import color_by_conservation # get some kinases fetch 1opk 3dtc 3p86 2eva 3efw, async=0 # turn on the sequence viewer set seq_view # align them into the "algn" object for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn") # color color_by_conservation aln=algn, as_putty=1 everything went as it should but when it came to the last command pymol gave me this error: "Bad or incorrectly specified alignment object" How can I fix this problem? Thanks |