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Re: [PyMOL] PyMOL 1.6 final release
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From: Gianluigi C. <chi...@ya...> - 2013-06-13 08:53:07
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Hi all,
I am experiencing a problem with the X11 version of 1.6 (MAC user).
The new version is not auto loading the plugins in the repository directory, which worked fine to me until yesterday, (pymol 1.5.3)
When opening HybridPymol no error messages are displayed, but if I manually give the commands in the window:
import sys, os
sys.path.append(os.path.expanduser('/MYPATH/Pymol'))
import pymolplugins
Pymol give me this error message:
File "/Applications/PyMOLX11Hybrid.app/pymol/modules/pymol/parser.py", line 260, in parse
exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
File "<string>", line 1, in <module>
File "/MYPATH/Pymol/pymolplugins/__init__.py", line 65, in <module>
x__initializePlugins = pmg_tk.PMGApp.initializePlugins
Any idea?
thank you
Gianluigi
________________________________
Da: Thomas Holder <tho...@sc...>
A: pymol-users <pym...@li...>
Inviato: Mercoledì 12 Giugno 2013 8:42
Oggetto: [PyMOL] PyMOL 1.6 final release
Greetings,
We are happy to announce the final release of PyMOL v1.6.0.0. Official
PyMOL sponsors can download ready-to-use installers as usual from
http://pymol.org/dsc/ip . The open-source code has been pushed to
sourceforge svn (revision 4030) and a downloadable bz2 source file is
also available from http://sf.net/p/pymol/ .
This release completes the transition to GLSL based real-time rendering.
Apart from that, it includes many fixes and improvements.
Changes in both Incentive and Open-Source:
* Completed OpenGL engine update; improved graphics performance.
* High-speed fonts, indicators, and 2D drawables (menus)
* Support sweep_angle setting with "Program > Scene Loop" Nutate/Rock
* Add bz2 support for reading PDB files
* Add support for width/height units in png command
* New command line argument "-y": Exit on error
* Support object=aln argument with alignto command
* VMD plugins have been updated
* New commands: split_chains, mse2met
* Spectrum command enhanced to take color lists like spectrumany
* ANISOU records are now saved if present
* Fixed alignment objects from "super" do not contain N atoms
* Fixed writing PDB files
* END before ENDMDL (SF-3496006)
* always right justify resn (SF-3539436)
* Fixed crash when loading with connect_mode=2
* Fixed shortcut auto-completion with exact prefixes
* Feedback fixes
* Fixed leading whitespace parsing in LITERAL parsing mode
* Fixed reading last ANISOU record from PDB file
* Surface lighting was enhanced/smoothed
* Fixed Scripts ending on "pymol.py"
* Cealign alignment object: support for multiple alignments
Changes in Incentive only:
* Presets for coloring by representation
* Settings
* Most settings are now documented in the Settings > Edit All GUI
* Tk Settings > Edit All GUI refactored to allow window resizing
and mouse wheel scrolling
* Iterate and alter have improved performance
* Morphing updates
* A > generate > morph
* Multi-state morphs
* "ramps" in C (color) menu
* Arbitrary object-level and atom-level properties
* Mouse wheel scrolls object-menu-panel and other scrollable widgets
* Spectrum command enhanced to take the new properties as expression
* Better tracking of hydrogens when editing with the Builder
* Add bz2 support for reading PDB/MAE/MOE/... files
We encourage PyMOL sponsors to check out the internal documentation:
http://pymol.org/dsc/dokuwiki/doku.php?id=media:new16
http://pymol.org/dsc/dokuwiki/doku.php?id=properties
http://pymol.org/dsc/dokuwiki/doku.php?id=media:morphing_updates
We welcome any feedback and bug reports.
Cheers,
- The PyMOL Team at Schrödinger
--
Thomas Holder
PyMOL Developer
Schrödinger Contractor
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