[PyMOL] FW: colouring states of a md trajectory

[Sridharan, S. <sridharans@MedImmune.com>]

Hi Tsjerk,

Many thanks for pointing this out. Thanks to the spectrum_states script authors as well. It worked perfectly!

Kind regards,
Sid.


________________________________
From: Tsjerk Wassenaar [mailto:ts...@gm...]
Sent: 02 June 2013 20:34
To: Sridharan, Sudharsan
Cc: pym...@li...
Subject: Re: [PyMOL] colouring states of a md trajectory

Hi Sid,

Have a look at this:

http://pymolwiki.org/index.php/Spectrum_states

Hope it helps,

Tsjerk

On Sun, Jun 2, 2013 at 8:06 PM, Sridharan, Sudharsan <sri...@me...<mailto:sri...@me...>> wrote:
Hi all,

Sorry this may be a naive question and probably has a simple answer but I haven't been able to figure it out!

I'd like to colour all the states of a md trajectory shown as ribbons with state 1 coloured the darkest, say black, gradually going to the lightest shade for the last state. How do I do this please. If I have two chains, how can I colour similarly but using two different colours for the two chains. (I was able to colour all the states using rainbow colours)

Many thanks.

Kind regards,
Sid.


Sudharsan Sridharan, Ph.D.
Scientist I
Protein Sciences, Department of Antibody Discovery and Protein Engineering
MedImmune* Ltd., Aaron Klug Building, Granta Park, Cambridge, CB21 6GH, UK.

Direct telephone: + 44(0)1223  898195 <> Facsimile: + 44(0)1223 471472 <> Email: sri...@me...<mailto:sri...@me...> <> Web: www.medimmune.com<http://www.medimmune.com>

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Tsjerk A. Wassenaar, Ph.D.
To the extent this electronic communication or any of its attachments contain information that is not in the public domain, such information is considered by MedImmune to be confidential and proprietary. This communication is expected to be read and/or used only by the individual(s) for whom it is intended. If you have received this electronic communication in error, please reply to the sender advising of the error in transmission and delete the original message and any accompanying documents from your system immediately, without copying, reviewing or otherwise using them for any purpose. Thank you for your cooperation.