From: Folmer F. <fo...@gm...> - 2012-10-31 07:53:46
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Hi Troels, I've been using http://www.pymolwiki.org/index.php/FindSurfaceResidues at some point. Seems to work well enough. Otherwise you could go through the PISA server at http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html But I don't remember how exactly I would get the surface residues out from that. mvh Folmer 2012/10/31 Troels Emtekær Linnet <tl...@gm...> > Hi Pymolers. > > How would you get a list of surface residues the fastest way? > > Like: > [3-10], [14-18] > > I have a rough structure from crystallography, and have made > a trypsin digest and mass spec analysis. > > And I see fragments which have been post-trans modified. > > Now I am interested in matching if those fragments are surface exposed or > internal. > > What tools does pymol have to find out if the residues are surface exposed? > Or is there another "easy" tool? > > Best > Troels Emtekær Linnet > Ved kløvermarken 9, 1.th > 2300 København S > Mobil: +45 60210234 > > > > ------------------------------------------------------------------------------ > Everyone hates slow websites. So do we. > Make your web apps faster with AppDynamics > Download AppDynamics Lite for free today: > http://p.sf.net/sfu/appdyn_sfd2d_oct > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > -- Folmer Fredslund |