Re: [PyMOL] Ca sphere size from b-factor value

[Jason V. <jas...@sc...>]

Hi Douglas,

You can do something as simple as this:

# fetch a protein

fetch 1ejg, async=0

# show as spheres

as spheres, n. CA

# set the vdw radii = some factor of the b-factor

alter n. CA, vdw=b/5

rebuild

Cheers,

-- Jason

On Tue, Jul 31, 2012 at 3:36 PM, Douglas Kojetin
<dou...@gm...> wrote:
> Hi All,
>
> I would like to set the sphere size for each Ca atom proportional to the b-factor value (the larger the b-factor the larger the sphere size) and also color the sphere based on the b-factor value.  Is there an easy way to adjust the sphere size according to b-factor value?
>
> Thanks,
> Doug
>
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

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