Re: [PyMOL] movie in pymol

[Jason V. <jas...@sc...>]

Hi Georgios Gkouridis,

RigiMOL is an Incentive PyMOL feature. To gain access to this, you'll
need to purchase a copy of PyMOL.

Cheers,

-- Jason

On Fri, Jul 13, 2012 at 3:18 PM,  <gu...@im...> wrote:
> Dear users,
> I would like to create a movie using Pymol between two different
> conformations (structures) of a protein 1NL3_coli and 1MN6coli. I read
> this can be done with rigimol. I am giving the following commands and
> getting an error when giving the following command
>> rigimol.morph ( "m_in", "m_out", refinement=5, async=1)
>
> What do I have to do for this? I am pasting the sequence of all the commands
> P.S. I also aligned the two structures.
> Thank you in advance very much
> Georgios Gkouridis
> Post-doc
> RUG/Single molecule microscopy
> The Netherlands
>
>
> PyMOL>create m_in, 1NL3_coli, 1, 1
> Selector: found 13230 atoms.
>   Executive: object "m_in" created.
>
> PyMOL>create m_in, 1MN6coli, 1, 2
>   Selector: found 13296 atoms.
>
> PyMOL>rigimol.morph ( "m_in", "m_out", refinement=5, async=1)
> Traceback (most recent call last):
>    File "C:\Program Files\PyMOL\PyMOL/modules\pymol\parser.py", line
> 464, in parse
>      exec(layer.com2+"\n",self.pymol_names,self.pymol_names)
>    File "<string>", line 1, in <module>
> NameError: name 'rigimol' is not defined
>
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-- 
Jason Vertrees, PhD
PyMOL Product Manager
Schrödinger, LLC

(e) Jas...@sc...
(o) +1 (603) 374-7120