Re: [PyMOL] How to overcome bond length restriction to build a general stereo geometric model

[Thomas H. <sp...@us...>]

Hi Teddy,

it's "CONECT" with only 1 "N". The big bond length is no problem for 
pymol. Check this simple example:

pseudoatom mol, name=A, pos=(0,0,0)
pseudoatom mol, name=B, pos=(10,0,0)
bond name A, name B
save /tmp/mol.pdb

The written file has HETATM and CONECT records and loads fine in PyMOL 
again.

Cheers,
   Thomas

Shaoqing Zhang wrote, On 12/21/11 21:29:
> I want to build a geometric model with HETATM as general particles, and 
> put CONNECT information to show the bonds between the particles. But the 
> bond length is very big comparing with those of the usual chemical 
> bonds. The bonds do not show up in pymol. How to solve this problem? 
> Thank you very much.
> 
> Teddy 

-- 
Thomas Holder
MPI for Developmental Biology
Spemannstr. 35
D-72076 Tübingen