Re: [PyMOL] ray - volume

[lina <lin...@gm...>]

On Wed, Nov 30, 2011 at 12:25 AM, Jason Vertrees
<jas...@sc...> wrote:
> Hi David,
>
> Are your data and color ramp points correct? If you send me the data,
> I can double-check what we've done.

I am also confusing how to put the quasi-center of volume on some certain atom.

Even I only chose one atom, but the volume still shifted away from
this certain atom,

The way I tried based on this page:
 http://www.pymolwiki.org/index.php/Isomesh

might I understand volume totally wrong.

Thanks ahead for pointing out.

p.s frankly speaking, I am interested in "volumn" simply cause the
representation looks fantastic.
>
> Cheers,
>
> -- Jason
>
> On Tue, Nov 29, 2011 at 10:56 AM, David Hall <li...@co...> wrote:
>> Since I happen to be playing with volumes right now, I tried that and
>> it causes my sticks to pop out of the volumes (see attached).  This is
>> on a build of the latest open source code in SVN.
>>
>> Thanks,
>> David
>>
>> On Tue, Nov 29, 2011 at 10:34 AM, Jason Vertrees
>> <jas...@sc...> wrote:
>>> Hi Lina,
>>>
>>> set ray_volume, on
>>>
>>> Cheers,
>>>
>>> -- Jason
>>>
>>> On Tue, Nov 29, 2011 at 10:27 AM, lina <lin...@gm...> wrote:
>>>> Hi,
>>>>
>>>> a quick question, how to keep the volume during ray.
>>>>
>>>> the volume is here,
>>>>
>>>> but after ray,
>>>>
>>>> it's gone,
>>>>
>>>> what's kinda of special settings I need to take care?
>>>>
>>>> Thanks with best regards,
>>>>
>>>> ------------------------------------------------------------------------------
>>>> All the data continuously generated in your IT infrastructure
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>>>
>>>
>>>
>>> --
>>> Jason Vertrees, PhD
>>> PyMOL Product Manager
>>> Schrodinger, LLC
>>>
>>> (e) Jas...@sc...
>>> (o) +1 (603) 374-7120
>>>
>>> ------------------------------------------------------------------------------
>>> All the data continuously generated in your IT infrastructure
>>> contains a definitive record of customers, application performance,
>>> security threats, fraudulent activity, and more. Splunk takes this
>>> data and makes sense of it. IT sense. And common sense.
>>> http://p.sf.net/sfu/splunk-novd2d
>>> _______________________________________________
>>> PyMOL-users mailing list (PyM...@li...)
>>> Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
>>> Archives: http://www.mail-archive.com/pym...@li...
>>
>
>
>
> --
> Jason Vertrees, PhD
> PyMOL Product Manager
> Schrodinger, LLC
>
> (e) Jas...@sc...
> (o) +1 (603) 374-7120