From: Thomas H. <sp...@us...> - 2011-10-15 08:57:01
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Hi Masataka, do you have a X server running on Windows? It works for me with Cygwin with installed X and GL libraries (but it's not very convenient because quite slow). ssh -Y linuxserver pymol If pymol is set up on that linux server correct and runs there by just typing "pymol", it should as well from an X-forwarded ssh connection. No need to export variables. Don't use the -R and -display arguments. Cheers, Thomas grantaka36 wrote, On 10/14/11 07:35: > Dear list members, > > Would you please tell me the way, how to activate pymol from remote > server? i.e. how to start pymol in [S] by scripting from [C] > > ------------------------------ > - From Windows client [C], SSH2 logging in to the remote server [S] > (Linux x64, Ubuntu 10) > - [S] > -- installed PyMOL 1.2 r2, PATH includes '/usr/bin/pymol' so only > 'pymol' entering enable to activate pymol GUI > -- 'python' returns > -- Python 2.6.6 (r266:84292, Sep 15 2010, 16:22:56) > -- [GCC 4.4.5] on linux2 > - [C] > -- first trying the following: > PYMOL_PATH=/usr/bin/pymol > HOST_ID=`uname -n` > pymol -R -display:${HOST_ID}:0.0 > -- returns: > Traceback (most recent call last): > File "/usr/lib/python2.6/runpy.py", line 122, in _run_module_as_main > "__main__", fname, loader, pkg_name) > File "/usr/lib/python2.6/runpy.py", line 34, in _run_code > exec code in run_globals > File "/usr/lib/pymodules/python2.6/pymol/__init__.py", line 495, in <module> > invocation.parse_args(pymol_argv) > File "/usr/lib/pymodules/python2.6/pymol/invocation.py", line 251, > in parse_args > options.stereo_mode = int(av.pop()) > IndexError: pop from empty list > ------------------------------ > > By referring, > http://www.pymolwiki.org/index.php/Launching_PyMOL#Launching_PyMOL_from_an_external_application >> If PYMOL_PATH, LD_LIBRARY_PATH, and TCL_LIBRARY are correctly defined, then you can launch PyMOL from an external Python program > But I don't know which path to designate LD_LIBRARY_PATH and TCL_LIBRARY > > > Regards, > Masataka -- Thomas Holder MPI for Developmental Biology Spemannstr. 35 D-72076 Tübingen |