Re: [PyMOL] Coordinates of a mesh

[Bjoern-oliver G. <bjo...@st...>]

The error I get is from the following command:
super 1A9U, mesh
  ExecutiveAlign: invalid selections for alignment.

I think that the problem is that I try to align the mesh points with  
an protein.
In my understanding, I need this one to run the get_object matrix command.
Or do I understand something in the wrong manner??


Zitat von Troels Emtekær Linnet <tl...@gm...>:

> Can you provide the error message?
>
>
>
> 2011/8/25 Bjoern-oliver Gohlke <
> bjo...@st...>
>
>> Hi,
>>
>> I actual try to get the coordinates of the mesh from a protein/selection.
>>
>> At first I run the following command:
>> open("pymol.mesh","w").write( cmd.get_povray()[1] )
>>
>> There I get points shifted by one axis or something like that.
>> Then somebody here from the mailinglist tells me that I have to use
>> cmd.get_object_matrix.
>> I read in the Wiki how to use this command.
>> (http://www.pymolwiki.org/index.php/Get_object_matrix)
>> But when I try to run the example with my points and the protein I
>> always get an error.
>> Can sombody help me, or tell me what I do wrong??
>>
>> Thanks in advance,
>> Björn
>>
>>
>>
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>