Re: [PyMOL] Compilation of PyMOL on Mac

[Matthias S. <mat...@gm...>]

Hi,

Any hints as to how to compile PyMOL with the VMD Molfile plugin would be
highly appreciated.

I tried to download the tarball in Fink, I modified setup.py and then
re-built and re-installed PyMOL in Fink. Fink realises that the original
tarball has been modified, and it builds the modified source. However the
VMD Molfile plugin is still not working.

The default builds of both MacPorts and Fink don't incldue the VMD Molfile
plugin.

Any suggestions?

Best,

Matthias

On Thu, Aug 11, 2011 at 5:42 PM, Matthias Schmidt <
mat...@gm...> wrote:

> Hi,
>
> No the existing fink pymol does not work for me because an essential plug
> in is not compiled. Neither MacPorts nor Fink compile Pymol with XTC
> support. That means that the VMD Molfile plugin is not included in the
> build, hence I'm not able to look at trajectories, which is a pain.
>
> The VMD Molfile plugin is included in the opensource tree (/contrib/uiuc),
> and can be installed with setup.py.
>
> Matthias
>
>
> On Thu, Aug 11, 2011 at 5:26 PM, <li...@co...> wrote:
>
>> Does the existing fink pymol not work for you?
>> http://pdb.finkproject.org/pdb/package.php/pymol-py27
>>
>> You can look at it's info file for guidance on building on Mac if you want
>> your own build.
>>
>> -David
>>
>> On Aug 11, 2011, at 12:15 PM, Matthias Schmidt <
>> mat...@gm...> wrote:
>>
>> Hi,
>>
>> I downloaded PyMol from <https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol>
>> https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol
>> and tried to compile it with /sw/bin/python2.7 setup.py build
>>
>> The compilation works fine, but when it comes to linking, I get an error
>> related to undefined symbols in an OpenGL library wrapper.
>>
>> Do you have any advice on how to compile Pymol succesfully on a Mac
>> (SnowLeopard, with XCode and Fink) or how to solve the linking error? I have
>> installed Glew using fink and so I have the following files in sw/
>>
>> ./include/GL/glew.h
>> ./include/GL/wglew.h
>> ./lib/libGLEW.1.6.0.dylib
>> ./lib/libGLEW.1.dylib
>> ./lib/libGLEW.a
>> ./lib/libGLEW.dylib
>> ./lib/pkgconfig/glew.pc
>>
>> I use /opt/local/bin/i686-apple-darwin10-g++-4.0.1 from ports as
>> compiler.
>>
>> Nevertheless, I don't manage to get it compiled.
>>
>> Best,
>>
>> Matthias
>> --
>> Structural Bioinformatics and Computational Biochemistry Unit
>> Dept. of Biochemistry
>> University of Oxford
>>
>> <http://sbcb.bioch.ox.ac.uk/schmidt.php>
>> http://sbcb.bioch.ox.ac.uk/schmidt.php
>>
>>
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>
>
> --
> Best,
>
> Matthias
> --
> Structural Bioinformatics and Computational Biochemistry Unit
> Dept. of Biochemistry
> University of Oxford
>
> http://sbcb.bioch.ox.ac.uk/schmidt.php
>
>


-- 
Best,

Matthias
-- 
Structural Bioinformatics and Computational Biochemistry Unit
Dept. of Biochemistry
University of Oxford

http://sbcb.bioch.ox.ac.uk/schmidt.php