From: Joel T. <joe...@ot...> - 2011-08-04 22:23:02
|
Hi folks/Jason, I have been playing with PyMOL again lately for teaching and have noticed that when you run the menu command Action>preset>ligand site >cartoon which looks great... if there are any H-bonds with a protein chain amide carbonyl, then the carbonyl is not displayed. If you use "Show>lines or sticks" this does not then show them. I'm sure there is a background (python) setting to adjust this but is it possible to include the carbonyl's in question with the initial preset? HIV protease is a good example to show this. Cheers Joel _________________________________ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box 56 Dunedin 9054 New Zealand Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta 56 Otepoti 9054 Aotearoa Ph / Waea +64 3 4797293 Fax / Waeawhakaahua +64 3 4797034 |