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Re: [PyMOL] Show sticks for phosphoserine (SEP) side chain
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From: Jason V. <jas...@sc...> - 2010-03-28 14:07:47
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> I wonder if there’s any way to get around this? Obviously I can just turn off cartoon_side_chain_helper, but it’s so handy... Jared, Just select the atoms you want shown as sticks in the side-chain and turn off their cartoon representation: # 1. Using the mouse, select just those three oxygens; you now have the selection "sele" hide cartoons, sele -- Jason On Thu, Mar 25, 2010 at 6:15 PM, Sampson, Jared <Jar...@ny...> wrote: > Hi all - > > I have a structure where a serine is phosphorylated, so the residue is SEP. If cartoon_side_chain_helper is on, the sticks disappear from the phosphate group oxygens (O1P, O2P and O3P), even if I issue something like > > show sticks, (obj and i. 54 and n. P,O1P,O2P,O3P) > > I wonder if there’s any way to get around this? Obviously I can just turn off cartoon_side_chain_helper, but it’s so handy... > > Thanks, > > Jared > > Jared Sampson > Xiangpeng Kong Lab > NYU Langone Medical Center > New York, NY 10016 > (212) 263-7898 > > ------------------------------------------------------------ > This email message, including any attachments, is for the sole use of the intended recipient(s) and may contain information that is proprietary, confidential, and exempt from disclosure under applicable law. Any unauthorized review, use, disclosure, or distribution is prohibited. If you have received this email in error please notify the sender by return email and delete the original message. Please note, the recipient should check this email and any attachments for the presence of viruses. The organization accepts no liability for any damage caused by any virus transmitted by this email. > ================================= > > > ------------------------------------------------------------------------------ > Download Intel® Parallel Studio Eval > Try the new software tools for yourself. Speed compiling, find bugs > proactively, and fine-tune applications for parallel performance. > See why Intel Parallel Studio got high marks during beta. > http://p.sf.net/sfu/intel-sw-dev > _______________________________________________ > PyMOL-users mailing list (PyM...@li...) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pym...@li... > -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) Jas...@sc... (o) +1 (603) 374-7120 |