Re: [PyMOL] Surface vertex list

[Tsjerk W. <ts...@gm...>]

Hi Jim,

Hmmm. I think your best option is to color the surface according to
the atoms and write the surface in povray format. This will give you
all the vertices. Just another thought springing to mind, you could
cycle over the atoms using a script, writing away only the part of the
surface belonging to the active atom.
I don't think the vertices are available otherwise, and you would need
to dive into the source code to get them out otherwise.

Best,

Tsjerk

On 4/17/07, jjv5 <jj...@jj...> wrote:
> Hello,
>
> Is there a way to access the individual vertices of a surface abd there
> association with atoms? I know it's done under the hood, but can I write
> some code that say returns a list of surface vertices associated with a
> particular atom?
>
> In the end, I'd like to know if two atoms share a surface vertex to
> determine if they are "surface neighbors".
>
> Thanks,
> Jim
>
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-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
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