Re: [PyMOL] Is there a way to show three dimsional movement of residues?

[Robert I. <imm...@gm...>]

Ronald,

You can try the yale morph server:

http://molmovdb.mbb.yale.edu/molmovdb/morph/

There are probably other tools that will perform linear interpolation
of structures and output "intermeditate" .pdb files, which could be
cleaned up and used in pymol to create a similar, but more user
controlled movie.

Hope this helps,

-bob



On 6/27/06, Ronald Chiu <rcc...@gm...> wrote:
>
> Hello All,
>
> Is there a way to show the three dimesional (x, y, z) coordinates for a
> selected alpha carbon?
>
> Lets say that you have two homologous structures aligned; one crystal
> structure  in unbound state and the other in agonist bound state.  How would
> you show the movement (change in positon of a residue) between the two
> states.
>
> Thanks for your help.
>
> Ron
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