Re: [PyMOL] Mix pml script and PDB file

[Sebastien M. <seb...@ig...>]

> Sebastien,
>=20
> Yes, you can do with with a "p1m" file, which is like a "pml" file, but=
 data can be included as well.  Also note that p1m files are intended for=
 web publishing, so embedded Python is disallowed.  In p1m files, there i=
s an "embed" command that enables this for PDB, MOL, MOL2, SDF, and XPLOR=
 data.  It works like this:
>=20
> embed tag, format
> ****REPLACE THIS LINE WITH YOUR DATA FILE****
> embed end
>=20
> load_embedded tag
>=20
> where tag is some identifier of your choice.
>=20
> Cheers,
> Warren

Warren,
It is the format I sought for. E.g.:
	embed 1H1S, pdb
	HEADER    TRANSFERASE                             21-JUL-02   1H1S
	TITLE     STRUCTURE OF HUMAN THR160-PHOSPHO CDK2/CYCLIN A COMPLEXED
	...
	CONECT 9002 9000
	MASTER      531    0    4   64   20    0    8    6 9701    4   82   88
	END
	embed end
	load_embedded 1H1S
	...

I load structure and PyMOL instructions in one file.
Thanks

>>Hello,
>>Is there a way to get one file with pymol commands (pml=20
>>script) and with the structure (PDB file) ?
>>
>>I can get this with Rasmol and the ras script file.
>>Can I get the same kind of file with PyMOL ?
>>
>>Thanks

--=20
S=E9bastien Moretti
http://www.igs.cnrs-mrs.fr/
CNRS - IGS
31 chemin Joseph Aiguier
13402 Marseille cedex