Re: [proteowizard-support] Proteowizard and mzIdentML

[Matthew C. <mat...@gm...>]

Fixed. Thanks for reporting.

On 9/10/2012 6:38 PM, Matthew Chambers wrote:
> Hi Sean,
>
> I'm looking at this tomorrow. It's definitely a pwiz bug in the contact parsing.
>
> Thanks,
> -Matt
>
>
> On 9/7/2012 6:56 PM, Sean McIlwain wrote:
>> Hello,
>>
>>
>> I'm currently trying to use proteowizad's mzIdentML code to parse
>> mzIdentML files in crux.  Looking at the
>> bibliospec's MzIdentReader.cpp as reference, I wrote a
>> rudimentary parser to open the files.
>>
>> I downloaded the Sequest_example_ver1.1.mzid file from the
>> http://psi-pi.googlecode.com/svn/trunk/examples/1_1examples/Sequest_example_ver1.1.mzid
>> and tried opening it with the code
>>
>> identDataFile* pwiz_reader_ = new IdentDataFile("...");
>>
>> runtime shows:
>>
>> terminate called after throwing an instance of 'std::runtime_error'
>>    what():  [References::resolve()] Failed to resolve reference.
>>    object type: OrganizationPtr
>>    reference id: MPCINSTITUTE
>>    referent list: 4
>>      THERMOCORP
>>      MPCMEYER
>>
>>      RUBUNIVERSITY
>>
>> Aborted
>>
>>
>> Any hints about that this is about?
>> This result is also from proteowizard's current svn.
>>
>> Thanks,
>> Sean
>>
>>