Re: [proteowizard-support] Regarding MsConvertGUI

[Gavin B. <gav...@st...>]

Hi Kevin,

Have you converted .d type files before? I know with Thermo files you must accept the license agreement for msfilereader and maybe this isn't coming up in the GUI version. Try running it from a batch file and see if that works. The code should be something like this:

cd C:\pwiz
msconvert C:\Rprocessing\rawdata\*.d -o C:\Rprocessing\mzXMLfiles --mzXML --filter "peakPicking true 1"  -v

use the peakpicking filter if your files are in profile and you need centroid mode.

If this isn't the issue it may be to do with either your file type (are they just single polarity MS files?) or you may need to install the required packages, Net Framework 3.5 SP1 And MSVC 2008 SP1 if you haven't already.

Cheers,

Gavin.

-----Original Message-----
From: Kevin Yonghoon Cho [mailto:kev...@sc...] 
Sent: 14 December 2011 01:42
To: su...@pr...
Subject: [proteowizard-support] Regarding MsConvertGUI

To Whom It May Concern,

I'm using your converter tool(ver.2_2_3173), and I were able to convert many files using the software.  However, I was not able to convert Agilent's .d files to mzXML.  From the GUI, it says opening the file, but doesn't proceed the progress, and stuck there forever.

Do you have any idea, why this is not working? Please let me know if you have solution for this.

Thank you,
Kevin


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