Re: [Open-ms-general] IDFileConverter

[Hannes R. <han...@gm...>]

Maybe a better error message with some indication what the user should do
might help here?

Hannes

sent from my smartphone -- you may keep any typos you find.
On Aug 11, 2015 2:06 AM, "Hendrik Weisser" <hw...@sa...> wrote:

> Hi!
>
> > I guess there is some mismatch issue in the the pepXML files. I think
> the pepXML files has corrected specify the location of the mzML files.
> > <msms_run_summary
> base_name="/work/huh18/2015/Proteomics/pipeline/PXD000279/20130510_EXQ1_IgPa_QC_UPS2_03"
> msManufacturer="unknown" msModel="unknown" raw_data_type="raw"
> raw_data=".mzML">
>
> You can use the "mz_name" option of IDFileConverter to tell the program
> which filename to match in the "base_name" attribute. A unique suffix
> should be enough (e.g. the filename without the path), but note that the
> file extension is stripped (because usually the "base_name" in pepXML
> doesn't contain the extension).
> In your case, try "20130510_EXQ1_IgPa_QC_UPS2_03.mzML" as the value for
> the "mz_name" parameter.
>
>
> Cheers
>
> Hendrik
>
>
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