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From: <lcl...@us...> - 2012-04-18 00:28:01
|
Revision: 784
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=784&view=rev
Author: lclement
Date: 2012-04-18 00:27:55 +0000 (Wed, 18 Apr 2012)
Log Message:
-----------
Fixed minor bug where mail.smtp.auth=false does not get parsed properly
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <lcl...@us...> - 2012-04-17 22:09:14
|
Revision: 783
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=783&view=rev
Author: lclement
Date: 2012-04-17 22:09:02 +0000 (Tue, 17 Apr 2012)
Log Message:
-----------
Fixed the download method, added more unit test to verify destroy method
Modified Paths:
--------------
trunk/opal/opal-py/OpalClient.py
trunk/opal/opal-py/UnitTestOpalClient.py
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <lcl...@us...> - 2012-04-17 02:49:37
|
Revision: 782
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=782&view=rev
Author: lclement
Date: 2012-04-17 02:49:25 +0000 (Tue, 17 Apr 2012)
Log Message:
-----------
- First attempt to fix the documentation
- first version of the downloadResult function
Modified Paths:
--------------
trunk/opal/opal-py/OpalClient.py
trunk/opal/opal-py/UnitTestOpalClient.py
trunk/opal/opal-py/docs/index.html
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From: <lcl...@us...> - 2012-04-16 23:52:45
|
Revision: 781
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=781&view=rev
Author: lclement
Date: 2012-04-16 23:52:39 +0000 (Mon, 16 Apr 2012)
Log Message:
-----------
More methods in the OpalClient
More unit tests in UnitTestOpalClient
Updated make-dist for the new version
Modified Paths:
--------------
trunk/opal/opal-py/CHANGELOG
trunk/opal/opal-py/OpalClient.py
trunk/opal/opal-py/UnitTestOpalClient.py
trunk/opal/opal-py/make-dist.sh
Added Paths:
-----------
trunk/opal/opal-py/etc/2HTY_A-2HTY_A.pdbqt
trunk/opal/opal-py/etc/test.config
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From: <lcl...@us...> - 2012-04-16 23:50:44
|
Revision: 780
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=780&view=rev
Author: lclement
Date: 2012-04-16 23:50:38 +0000 (Mon, 16 Apr 2012)
Log Message:
-----------
updating the wsdl
Added Paths:
-----------
trunk/opal/opal-py/wsdl/opal.wsdl
trunk/opal/opal-py/wsdl/opal_old_2.0.wsdl
Removed Paths:
-------------
trunk/opal/opal-py/wsdl/opal.wsdl
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From: <lcl...@us...> - 2012-04-16 19:42:27
|
Revision: 779
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=779&view=rev
Author: lclement
Date: 2012-04-16 19:42:21 +0000 (Mon, 16 Apr 2012)
Log Message:
-----------
New stubs for Opal 2.4
Modified Paths:
--------------
trunk/opal/opal-py/AppService_client.py
trunk/opal/opal-py/AppService_server.py
trunk/opal/opal-py/AppService_types.py
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From: <lcl...@us...> - 2012-04-09 23:54:42
|
Revision: 778
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=778&view=rev
Author: lclement
Date: 2012-04-09 23:54:36 +0000 (Mon, 09 Apr 2012)
Log Message:
-----------
Generic service client now uses opalclient
Modified Paths:
--------------
trunk/opal/opal-py/GenericServiceClient.py
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From: <lcl...@us...> - 2012-04-09 23:54:15
|
Revision: 777
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=777&view=rev
Author: lclement
Date: 2012-04-09 23:54:09 +0000 (Mon, 09 Apr 2012)
Log Message:
-----------
Now the Apbs Client uses OpalClient interface
Modified Paths:
--------------
trunk/opal/opal-py/ApbsClient.py
trunk/opal/opal-py/etc/apbs.in
trunk/opal/opal-py/etc/ion.xml
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From: <lcl...@us...> - 2012-04-09 23:53:36
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Revision: 776
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=776&view=rev
Author: lclement
Date: 2012-04-09 23:53:30 +0000 (Mon, 09 Apr 2012)
Log Message:
-----------
New version of the OpalClient some bugfixes a a couple of new methods
Modified Paths:
--------------
trunk/opal/opal-py/OpalClient.py
trunk/opal/opal-py/UnitTestOpalClient.py
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From: <lcl...@us...> - 2012-04-05 02:48:48
|
Revision: 775
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=775&view=rev
Author: lclement
Date: 2012-04-05 02:48:42 +0000 (Thu, 05 Apr 2012)
Log Message:
-----------
New OpalClient python class with cleaner API to access Opal
Added Paths:
-----------
trunk/opal/opal-py/OpalClient.py
trunk/opal/opal-py/UnitTestOpalClient.py
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From: <j2...@us...> - 2011-07-27 01:32:14
|
Revision: 774
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=774&view=rev
Author: j2ren
Date: 2011-07-27 01:32:07 +0000 (Wed, 27 Jul 2011)
Log Message:
-----------
adding sample opal meta configs
Added Paths:
-----------
trunk/opal/playground/opal_meta_configs/
trunk/opal/playground/opal_meta_configs/apbs_adv_meta.txt
trunk/opal/playground/opal_meta_configs/apbs_adv_meta_config.xml
trunk/opal/playground/opal_meta_configs/apbs_basic_meta.txt
trunk/opal/playground/opal_meta_configs/apbs_basic_meta_config.xml
trunk/opal/playground/opal_meta_configs/apbs_config.xml
trunk/opal/playground/opal_meta_configs/apbs_parallel_adv_meta.txt
trunk/opal/playground/opal_meta_configs/apbs_parallel_adv_meta_config.xml
trunk/opal/playground/opal_meta_configs/autoclickchem_config.xml
trunk/opal/playground/opal_meta_configs/autodock_config.xml
trunk/opal/playground/opal_meta_configs/autodock_meta.txt
trunk/opal/playground/opal_meta_configs/autodock_meta_config.xml
trunk/opal/playground/opal_meta_configs/autodock_vs_meta.txt
trunk/opal/playground/opal_meta_configs/autodock_vs_meta_config.xml
trunk/opal/playground/opal_meta_configs/autogrid_config.xml
trunk/opal/playground/opal_meta_configs/autogrid_meta.txt
trunk/opal/playground/opal_meta_configs/autogrid_meta_config.xml
trunk/opal/playground/opal_meta_configs/autogrid_screen_meta_config.txt
trunk/opal/playground/opal_meta_configs/autogrid_screen_meta_config.xml
trunk/opal/playground/opal_meta_configs/babel_config.xml
trunk/opal/playground/opal_meta_configs/cat_config.xml
trunk/opal/playground/opal_meta_configs/clustalw_config.xml
trunk/opal/playground/opal_meta_configs/date_config.xml
trunk/opal/playground/opal_meta_configs/debug_config.xml
trunk/opal/playground/opal_meta_configs/debug_meta.txt
trunk/opal/playground/opal_meta_configs/debug_meta_config.xml
trunk/opal/playground/opal_meta_configs/env_config.xml
trunk/opal/playground/opal_meta_configs/filter_meta.txt
trunk/opal/playground/opal_meta_configs/filter_meta_config.xml
trunk/opal/playground/opal_meta_configs/fimo_meta.txt
trunk/opal/playground/opal_meta_configs/fimo_meta_config.xml
trunk/opal/playground/opal_meta_configs/glam2_meta.txt
trunk/opal/playground/opal_meta_configs/glam2_meta_config.xml
trunk/opal/playground/opal_meta_configs/glam2scan_meta.txt
trunk/opal/playground/opal_meta_configs/glam2scan_meta_config.xml
trunk/opal/playground/opal_meta_configs/gomo_meta_config.xml
trunk/opal/playground/opal_meta_configs/gromos_cluster_meta.txt
trunk/opal/playground/opal_meta_configs/gromos_cluster_meta_config.xml
trunk/opal/playground/opal_meta_configs/ligand_db_retrieve_meta.txt
trunk/opal/playground/opal_meta_configs/ligand_db_retrieve_meta_config.xml
trunk/opal/playground/opal_meta_configs/ligand_db_upload_meta.txt
trunk/opal/playground/opal_meta_configs/ligand_db_upload_meta_config.xml
trunk/opal/playground/opal_meta_configs/mast_config.xml
trunk/opal/playground/opal_meta_configs/mast_meta.txt
trunk/opal/playground/opal_meta_configs/mast_meta_config.xml
trunk/opal/playground/opal_meta_configs/mcast_meta.txt
trunk/opal/playground/opal_meta_configs/mcast_meta_config.xml
trunk/opal/playground/opal_meta_configs/meme-chip_meta.txt
trunk/opal/playground/opal_meta_configs/meme-chip_meta_config.xml
trunk/opal/playground/opal_meta_configs/meme_config.xml
trunk/opal/playground/opal_meta_configs/meme_meta.txt
trunk/opal/playground/opal_meta_configs/meme_meta_config.xml
trunk/opal/playground/opal_meta_configs/pdb2pqr_apbs_workflow_meta.txt
trunk/opal/playground/opal_meta_configs/pdb2pqr_apbs_workflow_meta_config.xml
trunk/opal/playground/opal_meta_configs/pdb2pqr_config.xml
trunk/opal/playground/opal_meta_configs/pdb2pqr_meta.txt
trunk/opal/playground/opal_meta_configs/pdb2pqr_meta_config.xml
trunk/opal/playground/opal_meta_configs/prepare_gpf_lib_meta.txt
trunk/opal/playground/opal_meta_configs/prepare_gpf_lib_meta_config.xml
trunk/opal/playground/opal_meta_configs/prepare_gpf_meta.txt
trunk/opal/playground/opal_meta_configs/prepare_gpf_meta_config.xml
trunk/opal/playground/opal_meta_configs/prepare_ligand_lib_meta.txt
trunk/opal/playground/opal_meta_configs/prepare_ligand_lib_meta_config.xml
trunk/opal/playground/opal_meta_configs/prepare_ligand_meta.txt
trunk/opal/playground/opal_meta_configs/prepare_ligand_meta_config.xml
trunk/opal/playground/opal_meta_configs/prepare_receptor_meta.txt
trunk/opal/playground/opal_meta_configs/prepare_receptor_meta_config.xml
trunk/opal/playground/opal_meta_configs/run_autodock.py
trunk/opal/playground/opal_meta_configs/sleep_config.xml
trunk/opal/playground/opal_meta_configs/smap_db_search_meta.txt
trunk/opal/playground/opal_meta_configs/smap_db_search_meta_config.xml
trunk/opal/playground/opal_meta_configs/smap_pair_meta.txt
trunk/opal/playground/opal_meta_configs/smap_pair_meta_config.xml
trunk/opal/playground/opal_meta_configs/spamo_meta.txt
trunk/opal/playground/opal_meta_configs/spamo_meta_config.xml
trunk/opal/playground/opal_meta_configs/test.xml
trunk/opal/playground/opal_meta_configs/tomtom_config.xml
trunk/opal/playground/opal_meta_configs/tomtom_meta.txt
trunk/opal/playground/opal_meta_configs/tomtom_meta_config.xml
trunk/opal/playground/opal_meta_configs/traj_qr_meta.txt
trunk/opal/playground/opal_meta_configs/traj_qr_meta_config.xml
trunk/opal/playground/opal_meta_configs/vina_array_meta.txt
trunk/opal/playground/opal_meta_configs/vina_array_meta_config.xml
trunk/opal/playground/opal_meta_configs/vina_meta_config.txt
trunk/opal/playground/opal_meta_configs/vina_meta_config.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <j2...@us...> - 2011-07-14 21:18:13
|
Revision: 773
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=773&view=rev
Author: j2ren
Date: 2011-07-14 21:18:07 +0000 (Thu, 14 Jul 2011)
Log Message:
-----------
initial commit
Added Paths:
-----------
trunk/opal/playground/registry/reg/README
trunk/opal/playground/registry/reg/todo.txt
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <j2...@us...> - 2011-07-14 01:48:50
|
Revision: 772
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=772&view=rev
Author: j2ren
Date: 2011-07-14 01:48:44 +0000 (Thu, 14 Jul 2011)
Log Message:
-----------
fixed another bug caused by db case-insensitivity
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Registry.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <j2...@us...> - 2011-07-13 09:44:24
|
Revision: 771
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=771&view=rev
Author: j2ren
Date: 2011-07-13 09:44:18 +0000 (Wed, 13 Jul 2011)
Log Message:
-----------
modified because the db is now application based, not host base
Modified Paths:
--------------
trunk/opal/playground/registry/reg/RegistryClient.java
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From: <j2...@us...> - 2011-07-13 09:05:37
|
Revision: 770
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=770&view=rev
Author: j2ren
Date: 2011-07-13 09:05:31 +0000 (Wed, 13 Jul 2011)
Log Message:
-----------
renamed some stuff to avoid confusion cause the old stuff was host based, not app based
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Registry.java
trunk/opal/playground/registry/reg/ct.sql
trunk/opal/playground/registry/reg/hibernate.cfg.xml
trunk/opal/playground/registry/reg/hosts.txt
Added Paths:
-----------
trunk/opal/playground/registry/reg/OpalService.hbm.xml
trunk/opal/playground/registry/reg/OpalService.java
Removed Paths:
-------------
trunk/opal/playground/registry/reg/Host.hbm.xml
trunk/opal/playground/registry/reg/Host.java
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <j2...@us...> - 2011-07-10 03:08:00
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Revision: 769
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=769&view=rev
Author: j2ren
Date: 2011-07-10 03:07:54 +0000 (Sun, 10 Jul 2011)
Log Message:
-----------
fixed bug where the program fails after a while because too many db connections
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Registry.java
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From: <j2...@us...> - 2011-07-10 00:18:57
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Revision: 768
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=768&view=rev
Author: j2ren
Date: 2011-07-10 00:18:51 +0000 (Sun, 10 Jul 2011)
Log Message:
-----------
now no exception for case sensitive problems
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Registry.java
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From: <j2...@us...> - 2011-07-09 23:12:17
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Revision: 767
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=767&view=rev
Author: j2ren
Date: 2011-07-09 23:12:11 +0000 (Sat, 09 Jul 2011)
Log Message:
-----------
bug fixes and other modificatons
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Host.hbm.xml
trunk/opal/playground/registry/reg/Host.java
trunk/opal/playground/registry/reg/Registry.java
trunk/opal/playground/registry/reg/RegistryClient.java
trunk/opal/playground/registry/reg/cmd.sh
trunk/opal/playground/registry/reg/ct.sql
trunk/opal/playground/registry/reg/hibernate.cfg.xml
trunk/opal/playground/registry/reg/hosts.txt
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From: <j2...@us...> - 2011-06-24 01:37:06
|
Revision: 766
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=766&view=rev
Author: j2ren
Date: 2011-06-24 01:37:00 +0000 (Fri, 24 Jun 2011)
Log Message:
-----------
changed from host based to application based
Modified Paths:
--------------
trunk/opal/playground/registry/reg/Registry.java
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From: <j2...@us...> - 2011-06-22 18:31:54
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Revision: 765
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=765&view=rev
Author: j2ren
Date: 2011-06-22 18:31:48 +0000 (Wed, 22 Jun 2011)
Log Message:
-----------
not needed
Removed Paths:
-------------
trunk/opal/playground/registry/reg/cp.sh
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From: <j2...@us...> - 2011-06-22 18:06:01
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Revision: 764
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=764&view=rev
Author: j2ren
Date: 2011-06-22 18:05:54 +0000 (Wed, 22 Jun 2011)
Log Message:
-----------
not needed
Removed Paths:
-------------
trunk/opal/playground/registry/reg/registry.xml
This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site.
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From: <j2...@us...> - 2011-05-26 18:09:36
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Revision: 763
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=763&view=rev
Author: j2ren
Date: 2011-05-26 18:09:28 +0000 (Thu, 26 May 2011)
Log Message:
-----------
bug fix - previous version was sometimes throwing an exception if Vision was an to launch an opal job and at least one input file was used
Modified Paths:
--------------
trunk/opal/opal2-core/src/edu/sdsc/nbcr/opal/AppServiceImpl.java
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From: <j2...@us...> - 2011-05-19 23:34:59
|
Revision: 762
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=762&view=rev
Author: j2ren
Date: 2011-05-19 23:34:53 +0000 (Thu, 19 May 2011)
Log Message:
-----------
initial commit - developers document about the organization of the opal java GAE code. This was created by Cherry with Visio
Added Paths:
-----------
trunk/opal/opal-gae/GoogleAppEngine-opal-developer.vsd
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From: <j2...@us...> - 2011-05-19 23:32:56
|
Revision: 761
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=761&view=rev
Author: j2ren
Date: 2011-05-19 23:32:50 +0000 (Thu, 19 May 2011)
Log Message:
-----------
initial committ
Added Paths:
-----------
trunk/opal/opal-gae/TODO.txt
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From: <j2...@us...> - 2011-05-19 23:29:01
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Revision: 760
http://opaltoolkit.svn.sourceforge.net/opaltoolkit/?rev=760&view=rev
Author: j2ren
Date: 2011-05-19 23:28:54 +0000 (Thu, 19 May 2011)
Log Message:
-----------
initial commit - this is all Cherrys work. Missing work include support for basic opal jobs (although advanced opal job stuff is done), and job history support
Added Paths:
-----------
trunk/opal/opal-gae/workspace2/
trunk/opal/opal-gae/workspace2/.metadata/
trunk/opal/opal-gae/workspace2/.metadata/.lock
trunk/opal/opal-gae/workspace2/.metadata/.log
trunk/opal/opal-gae/workspace2/.metadata/.mylyn/
trunk/opal/opal-gae/workspace2/.metadata/.mylyn/.tasks.xml.zip
trunk/opal/opal-gae/workspace2/.metadata/.mylyn/contexts/
trunk/opal/opal-gae/workspace2/.metadata/.mylyn/repositories.xml.zip
trunk/opal/opal-gae/workspace2/.metadata/.mylyn/tasks.xml.zip
trunk/opal/opal-gae/workspace2/.metadata/.plugins/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/com.google.appengine.eclipse.core/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/com.google.appengine.eclipse.core/appengine-sdk-proxy.jar
trunk/opal/opal-gae/workspace2/.metadata/.plugins/com.google.gwt.eclipse.core/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/com.google.gwt.eclipse.core/uiBinderReferences
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.history/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.history/62/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.history/67/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.history/8c/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.projects/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.projects/opalappcherry/
trunk/opal/opal-gae/workspace2/.metadata/.plugins/org.eclipse.core.resources/.projects/opalappcherry/.indexes/
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trunk/opal/opal-gae/workspace2/opalappcherry/war/opal2/dashboard-jsp/parseAppMetadata.jsp
trunk/opal/opal-gae/workspace2/opalappcherry/war/opal2/glam2_4.4.0.xml
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/README.txt
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/RowExpander.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/dom-min.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/ext-all-debug.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/ext-all.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/ext-base.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/jquery.corner.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/jquery.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/scripts.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/services-panel.js
trunk/opal/opal-gae/workspace2/opalappcherry/war/scripts/yahoo-min.js
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