From: <mg...@us...> - 2007-11-06 15:43:48
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Revision: 1134 http://obo.svn.sourceforge.net/obo/?rev=1134&view=rev Author: mgibson Date: 2007-11-06 07:43:50 -0800 (Tue, 06 Nov 2007) Log Message: ----------- added 1.5-beta1 to unofficial phenote page Modified Paths: -------------- phenote/trunk/doc/phenote-website/phenote.html Modified: phenote/trunk/doc/phenote-website/phenote.html =================================================================== --- phenote/trunk/doc/phenote-website/phenote.html 2007-11-06 15:18:51 UTC (rev 1133) +++ phenote/trunk/doc/phenote-website/phenote.html 2007-11-06 15:43:50 UTC (rev 1134) @@ -1,62 +1,101 @@ <!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"> -<html><head> +<html> +<head> + + <meta content="text/html; charset=ISO-8859-1" http-equiv="content-type"> - <title>Phenote</title></head> + + <title>Phenote</title> +</head> + <body> + <h1 style="text-align: left;"><span style="font-weight: bold;"></span>Phenote<br> + </h1> + <br> + Phenote is a tool to annotate phenotypes using the Entity Quality paradigm. It takes advantage of ontologies. It uses term completion to allow curators quick access to the ontology terms they want to use. <br> + <br> +<a href="1.5-beta1/phenote.jnlp">Phenote 1.5-beta1</a><br> + <a href="1.4/phenote.jnlp">Phenote 1.4</a><br> + <br> + <br> + After phenote downloads the java jar files (takes a while) it will ask you what configuration you would like to use, fly, zfin, human,worm,birn....<br> + <br> + <a href="phenote-release-notes.shtml">Phenote Release Notes and old webstart releases</a><br> + Please see the release notes for recent changes.<br> + <br> + Zebrafish requires components of phenote(to plug into their non-public website), not a full web app. Here is a proof of concept of some of those components:<br> + <br> + <a href="http://reaper.lbl.gov/phenote/html/ncbo.html">Webby Phenote(components used by Zfin)</a><br> + <br> + Webby phenote is a collaboration with Sohel Merchant at dictyBase, and Christian Pich & Kevin Schaper at zfin. Here is what Dicty has done:<br> + <br> + <a href="http://165.124.152.194/db/cgi-bin/dictyBase/curation/phenotypeCuration.pl">DictyBase webby phenote</a><br> + <br> + <br> + We would love to get your feedback! Please report any bugs (ideally through the <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">bug tracker</a>) and let us know what you think (email:<a href="mailto:mg...@be..."> mg...@be...</a>, email list: <a href="mailto:obo...@li...">obo...@li...</a>).<br> + <br> + <h4>Phenote links:<br> + </h4> + <a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote">Phenote email list</a><br> + <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">Phenote bug tracker</a><br> + <a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote-bug-tracker">Bug tracker email list</a><br> + <a href="https://sourceforge.net/svn/?group_id=76834">Phenote source code (obo sourceforge svn)</a><br> + <a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">Phenote svn commit email list</a><br> + <a href="http://wiki.dictybase.org/dictywiki/index.php/Phenotype_Curation_Tool_Documentation#Usage">Dicty webby phenote wiki developer docs</a><br> @@ -72,6 +111,7 @@ + <a href="http://www.bioontology.org/wiki-internal/index.php/Phenotype_Annotation_Tool">Phenote ncbo internal wiki (ncbo folk only)</a><br> @@ -82,6 +122,7 @@ + <a href="developer-docs/dataadapter.html">Phenote dataadapter developer doc</a><br> @@ -89,6 +130,7 @@ + <a href="developer-docs/developer-docs.html">More developer docs</a><br> @@ -103,6 +145,7 @@ + <br> @@ -117,6 +160,7 @@ + <br> @@ -131,6 +175,7 @@ + If the Phenote webstart link fails to do anything, then there are probably problems with webstart and/or java(has to be jdk 1.5). Take a look at the <a href="webstart-troubleshooting.html">webstart troubleshooting</a><br> @@ -147,6 +192,7 @@ + page.<br> @@ -161,6 +207,7 @@ + <br> @@ -175,6 +222,7 @@ + Click here for <a href="phenote-java-requirements.html">phenote java requirements</a><br> @@ -190,6 +238,7 @@ + <br> @@ -204,6 +253,7 @@ + <br> @@ -218,6 +268,7 @@ + <br> @@ -232,6 +283,7 @@ + Old releases: <br> @@ -246,7 +298,9 @@ + <a href="1.4-beta3/phenote.jnlp">Phenote 1.4-beta3</a><br> + <a href="1.4-beta2/phenote.jnlp">Phenote 1.4-beta2</a><br> @@ -260,22 +314,27 @@ + <a href="1.3/phenote.jnlp">Phenote 1.3</a><br> + <a href="1.3-beta1/phenote.jnlp">Phenote 1.3-beta1</a><br> + <a href="1.2/phenote.jnlp">Phenote 1.2</a><br> + <a href="1.1/phenote.jnlp">Phenote 1.1</a><br> + <a href="1.0/phenote-flybase.jnlp">Phenote 1.0 for fly</a><br> @@ -290,6 +349,7 @@ + <a href="1.0/phenote-zfin.jnlp">Phenote 1.0 for zfin</a><br> @@ -303,6 +363,7 @@ + <a href="1.0/phenote-human.jnlp">Phenote 1.0 for human</a><br> @@ -314,6 +375,7 @@ + <br> @@ -328,6 +390,7 @@ + <a href="0.9/phenote-flybase.jnlp">Phenote 0.9 for fly</a><br> @@ -342,6 +405,7 @@ + <a href="0.9/phenote-zfin.jnlp">Phenote (standalone) 0.9 for zfin</a><br> @@ -355,6 +419,7 @@ + <br> @@ -368,6 +433,7 @@ + <a href="0.8/phenote-flybase.jnlp">Phenote 0.8 for fly.</a><br> @@ -382,6 +448,7 @@ + <a href="0.8/phenote-zfin.jnlp">Phenote (standalone) 0.8 for zfin</a><br> @@ -396,6 +463,7 @@ + <br> @@ -410,6 +478,7 @@ + <a href="0.7/phenote-flybase.jnlp">Phenote 0.7 for fly.</a><br> @@ -424,6 +493,7 @@ + <a href="0.7/phenote-zfin.jnlp">Phenote (standalone) 0.7 for zfin</a><br> @@ -438,6 +508,7 @@ + <br> @@ -452,6 +523,7 @@ + <a href="0.6/phenote-flybase.jnlp">Phenote 0.6 with fly anatomy</a><br> @@ -466,6 +538,7 @@ + <br> @@ -480,6 +553,7 @@ + <a href="0.6/phenote-zfin.jnlp">Phenote 0.6 with zebrafish anatomy</a><br> @@ -494,6 +568,7 @@ + <br> @@ -508,6 +583,7 @@ + <a href="0.5/phenote-flybase.jnlp">Phenote 0.5 webstart for FlyBase</a><br> @@ -522,6 +598,7 @@ + <br> @@ -536,6 +613,7 @@ + <a href="0.5/phenote-zfin.jnlp">Phenote 0.5 webstart for ZFIN</a><br> @@ -550,6 +628,7 @@ + <br> @@ -564,6 +643,7 @@ + <a href="0.4/phenote-flybase.jnlp">Phenote 0.4 webstart for FlyBase</a><br> @@ -578,6 +658,7 @@ + <br> @@ -592,6 +673,7 @@ + <a href="0.4/phenote-zfin.jnlp">Phenote 0.4 webstart for ZFIN</a><br> @@ -606,6 +688,7 @@ + <br> @@ -620,6 +703,7 @@ + <a href="0.3.1/phenote-webstart.jnlp">Phenote for CToL group (0.3.1)</a> (a special release for the CToL group that uses fish taxonomy)<br> @@ -636,6 +720,7 @@ + <br> @@ -650,6 +735,7 @@ + <a href="0.3/phenote-webstart.jnlp">Phenote 0.3</a><br> @@ -664,6 +750,7 @@ + <br> @@ -678,6 +765,7 @@ + <a href="0.2/phenote-webstart.jnlp">Phenote 0.2</a><br> @@ -692,6 +780,7 @@ + <br> @@ -706,6 +795,7 @@ + <a href="0.1/phenote-webstart.jnlp">Phenote 0.1</a><br> @@ -720,6 +810,7 @@ + <br> @@ -734,6 +825,7 @@ + <br> @@ -748,4 +840,6 @@ -</body></html> \ No newline at end of file + +</body> +</html> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |