From: <mg...@us...> - 2007-04-24 22:03:18
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Revision: 495 http://svn.sourceforge.net/obo/?rev=495&view=rev Author: mgibson Date: 2007-04-24 15:03:18 -0700 (Tue, 24 Apr 2007) Log Message: ----------- link to more dev docs Modified Paths: -------------- phenote/trunk/doc/phenote-website/phenote.html Modified: phenote/trunk/doc/phenote-website/phenote.html =================================================================== --- phenote/trunk/doc/phenote-website/phenote.html 2007-04-24 20:52:44 UTC (rev 494) +++ phenote/trunk/doc/phenote-website/phenote.html 2007-04-24 22:03:18 UTC (rev 495) @@ -7,12 +7,14 @@ + + <meta content="text/html; charset=ISO-8859-1" http-equiv="content-type"> @@ -20,12 +22,14 @@ + + <title>Phenote</title> </head> @@ -37,6 +41,7 @@ + <h1 style="text-align: left;"><span style="font-weight: bold;"></span>Phenote<br> @@ -44,6 +49,7 @@ + </h1> @@ -51,6 +57,7 @@ + <br> @@ -58,6 +65,7 @@ + Phenote is a tool to annotate phenotypes using the Entity Quality paradigm. It takes advantage of ontologies. It uses term completion to allow curators quick access to @@ -68,14 +76,18 @@ + <br> + <a href="1.1/phenote.jnlp">Phenote 1.1</a><br> + <br> + After phenote downloads the java jar files (takes a while) it will ask you what configuration you would like to use, fly, zfin, human,worm....<br> @@ -84,7 +96,9 @@ + <br> + Recent addditions include the ability to update config while preserving your changes, change config, tab delimited format, tabbed field panel, retrieve ontologies from web, retrieve from field to database, search @@ -97,6 +111,7 @@ + <br> @@ -104,6 +119,7 @@ + Zebrafish requires components of phenote(to plug into their non-public website), not a full web app. Here is a proof of concept of some of @@ -115,6 +131,7 @@ + <br> @@ -122,6 +139,7 @@ + <a href="http://reaper.lbl.gov/phenote/html/ncbo.html">Webby Phenote(components used by Zfin)</a><br> @@ -130,6 +148,7 @@ + <br> @@ -137,6 +156,7 @@ + Webby phenote is a collaboration with Sohel Merchant at dictyBase. Here is what they have done:<br> @@ -145,6 +165,7 @@ + <br> @@ -152,6 +173,7 @@ + <a href="http://165.124.152.194/db/cgi-bin/dictyBase/curation/phenotypeCuration.pl">DictyBase webby phenote</a><br> @@ -160,6 +182,7 @@ + <br> @@ -167,6 +190,7 @@ + <br> @@ -174,6 +198,7 @@ + We are doing these releases to get feedback. Please report any bugs (ideally through the <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">bug tracker</a>) and let us know what you @@ -184,7 +209,9 @@ + <br> + [In development - the bleeding edge if you will:<a href="1.1/phenote.jnlp"> Phenote 1.2</a> coming soon]<br> @@ -192,6 +219,7 @@ + <h4>Phenote links:<br> @@ -199,6 +227,7 @@ + </h4> @@ -206,6 +235,7 @@ + <a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote">Phenote email list</a><br> @@ -214,6 +244,7 @@ + <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">Phenote bug tracker</a><br> @@ -222,6 +253,7 @@ + <a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote-bug-tracker">Bug tracker email list</a><br> @@ -230,6 +262,7 @@ + <a href="https://sourceforge.net/svn/?group_id=76834">Phenote source code (obo sourceforge svn)</a><br> @@ -238,6 +271,7 @@ + <a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">Phenote svn commit email list</a><br> @@ -246,6 +280,7 @@ + <a href="http://wiki.dictybase.org/dictywiki/index.php/Phenotype_Curation_Tool_Documentation#Usage">Dicty webby phenote wiki developer docs</a><br> @@ -254,16 +289,20 @@ + <a href="http://www.bioontology.org/wiki-internal/index.php/Phenotype_Annotation_Tool">Phenote ncbo internal wiki (ncbo folk only)</a><br> + <a href="developer-docs/dataadapter.html">Phenote dataadapter developer doc</a><br> +<a href="developer-docs/developer-docs.html">More developer docs</a><br> + <br> @@ -271,6 +310,7 @@ + <a href="phenote-release-notes.html">Phenote Release Notes and old webstart releases</a><br> @@ -279,6 +319,7 @@ + <br> @@ -286,6 +327,7 @@ + If the Phenote webstart link fails to do anything, then there are probably problems with webstart and/or java(has to be jdk 1.5). Take a look at the <a href="webstart-troubleshooting.html">webstart troubleshooting</a><br> @@ -295,6 +337,7 @@ + page.<br> @@ -302,6 +345,7 @@ + <br> @@ -309,6 +353,7 @@ + Click here for <a href="phenote-java-requirements.html">phenote java requirements</a><br> @@ -317,6 +362,7 @@ + <br> @@ -324,6 +370,7 @@ + <br> @@ -331,6 +378,7 @@ + <br> @@ -338,6 +386,7 @@ + Old releases: <br> @@ -345,6 +394,7 @@ + <a href="1.0/phenote-flybase.jnlp">Phenote 1.0 for fly</a><br> @@ -352,16 +402,19 @@ + <a href="1.0/phenote-zfin.jnlp">Phenote 1.0 for zfin</a><br> + <a href="1.0/phenote-human.jnlp">Phenote 1.0 for human</a><br> + <br> @@ -369,6 +422,7 @@ + <a href="0.9/phenote-flybase.jnlp">Phenote 0.9 for fly</a><br> @@ -376,18 +430,21 @@ + <a href="0.9/phenote-zfin.jnlp">Phenote (standalone) 0.9 for zfin</a><br> + <br> + <a href="0.8/phenote-flybase.jnlp">Phenote 0.8 for fly.</a><br> @@ -395,6 +452,7 @@ + <a href="0.8/phenote-zfin.jnlp">Phenote (standalone) 0.8 for zfin</a><br> @@ -402,6 +460,7 @@ + <br> @@ -409,6 +468,7 @@ + <a href="0.7/phenote-flybase.jnlp">Phenote 0.7 for fly.</a><br> @@ -416,6 +476,7 @@ + <a href="0.7/phenote-zfin.jnlp">Phenote (standalone) 0.7 for zfin</a><br> @@ -423,6 +484,7 @@ + <br> @@ -430,6 +492,7 @@ + <a href="0.6/phenote-flybase.jnlp">Phenote 0.6 with fly anatomy</a><br> @@ -437,6 +500,7 @@ + <br> @@ -444,6 +508,7 @@ + <a href="0.6/phenote-zfin.jnlp">Phenote 0.6 with zebrafish anatomy</a><br> @@ -451,6 +516,7 @@ + <br> @@ -458,6 +524,7 @@ + <a href="0.5/phenote-flybase.jnlp">Phenote 0.5 webstart for FlyBase</a><br> @@ -465,6 +532,7 @@ + <br> @@ -472,6 +540,7 @@ + <a href="0.5/phenote-zfin.jnlp">Phenote 0.5 webstart for ZFIN</a><br> @@ -479,6 +548,7 @@ + <br> @@ -486,6 +556,7 @@ + <a href="0.4/phenote-flybase.jnlp">Phenote 0.4 webstart for FlyBase</a><br> @@ -493,6 +564,7 @@ + <br> @@ -500,6 +572,7 @@ + <a href="0.4/phenote-zfin.jnlp">Phenote 0.4 webstart for ZFIN</a><br> @@ -507,6 +580,7 @@ + <br> @@ -514,6 +588,7 @@ + <a href="0.3.1/phenote-webstart.jnlp">Phenote for CToL group (0.3.1)</a> (a special release for the CToL group that uses fish taxonomy)<br> @@ -523,6 +598,7 @@ + <br> @@ -530,6 +606,7 @@ + <a href="0.3/phenote-webstart.jnlp">Phenote 0.3</a><br> @@ -537,6 +614,7 @@ + <br> @@ -544,6 +622,7 @@ + <a href="0.2/phenote-webstart.jnlp">Phenote 0.2</a><br> @@ -551,6 +630,7 @@ + <br> @@ -558,6 +638,7 @@ + <a href="0.1/phenote-webstart.jnlp">Phenote 0.1</a><br> @@ -565,6 +646,7 @@ + <br> @@ -572,6 +654,7 @@ + <br> @@ -579,5 +662,6 @@ + </body> </html> This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |