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[Obo-svn-commit] SF.net SVN: obo: [308] phenote/trunk/doc/phenote-website/phenote.html
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From: <mg...@us...> - 2007-01-30 00:44:51
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Revision: 308
http://svn.sourceforge.net/obo/?rev=308&view=rev
Author: mgibson
Date: 2007-01-29 16:44:50 -0800 (Mon, 29 Jan 2007)
Log Message:
-----------
me to i
Modified Paths:
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phenote/trunk/doc/phenote-website/phenote.html
Modified: phenote/trunk/doc/phenote-website/phenote.html
===================================================================
--- phenote/trunk/doc/phenote-website/phenote.html 2007-01-24 21:15:31 UTC (rev 307)
+++ phenote/trunk/doc/phenote-website/phenote.html 2007-01-30 00:44:50 UTC (rev 308)
@@ -3,13 +3,17 @@
<head>
+
+
<meta content="text/html; charset=ISO-8859-1" http-equiv="content-type">
+
+
<title>Phenote</title>
</head>
@@ -17,55 +21,71 @@
<body>
+
<h1 style="text-align: left;"><span style="font-weight: bold;"></span>Phenote<br>
+
</h1>
+
<br>
+
Phenote is a tool to annotate phenotypes using the Entity Quality
paradigm. It takes advantage of
ontologies. It uses term completion to allow curators quick access to
the ontology terms they want to use. <br>
+
<br>
+
<a href="1.0/phenote-flybase.jnlp">Phenote 1.0 for fly</a><br>
+
<br>
+
<a href="1.0/phenote-zfin.jnlp">Phenote 1.0 for zfin</a><br>
+
<br>
+
<a href="1.0/phenote-zfin.jnlp"></a><a href="1.0/phenote-human.jnlp">Phenote 1.0 for human</a><br>
+
<br>
+
To be clear the above webstart links for zfin & fly were made via
configuration not hard wired code. Thus one could in theory configure
phenote for ones own purposes.<br>
+
<br>
+
Recent addditions include the ability to add any field you like, post compose terms, bulk
update, undo, spring framework, and
synonyms now are shown in the completion list.<br>
+
<br>
+
Zebrafish requires
components of phenote(to plug into their non-public
website), not a full web app. Here is a proof of concept of some of
@@ -73,205 +93,267 @@
components:<br>
+
<br>
+
<a href="http://reaper.lbl.gov/phenote/html/ncbo.html">Webby
Phenote(components used by Zfin)</a><br>
+
<br>
+
Webby phenote is a collaboration with Sohel Merchant at dictyBase.
Here is what they have done:<br>
+
<br>
+
<a href="http://165.124.152.194/db/cgi-bin/dictyBase/curation/phenotypeCuration.pl">DictyBase
webby phenote</a><br>
+
<br>
+
<br>
-I am doing these
+
+We are doing these
releases to get feedback. Please report any bugs (ideally through the <a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">bug
-tracker</a>) and let me know what you
-think (mg...@fr...).<br>
+tracker</a>) and let us know what you
+think (email:<a href="mailto:mg...@be..."> mg...@be...</a>, email list: <a href="mailto:obo...@li...">obo...@li...</a>).<br>
+
<br>
+
<h4>Phenote links:<br>
+
</h4>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote">Phenote
email list</a><br>
+
<a href="https://sourceforge.net/tracker/?group_id=76834&atid=887913">Phenote
bug tracker</a><br>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-phenote-bug-tracker">Bug
tracker email list</a><br>
+
<a href="https://sourceforge.net/svn/?group_id=76834">Phenote source
code (obo sourceforge svn)</a><br>
+
<a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">Phenote
svn commit email list</a><br>
+
<a href="http://wiki.dictybase.org/dictywiki/index.php/Phenotype_Curation_Tool_Documentation#Usage">Dicty
webby phenote wiki developer docs</a><br>
+
<a href="http://www.bioontology.org/wiki-internal/index.php/Phenotype_Annotation_Tool">Phenote
ncbo internal wiki (ncbo folk only)</a><br>
+
<br>
+
<a href="phenote-release-notes.html">Phenote Release Notes and old
webstart releases</a><br>
+
<br>
+
If the Phenote webstart link fails to do anything, then there are
probably problems
-with webstart and/or java(has to be jdk 1.5). Take a look at my <a href="webstart-troubleshooting.html">webstart troubleshooting</a><br>
+with webstart and/or java(has to be jdk 1.5). Take a look at the <a href="webstart-troubleshooting.html">webstart troubleshooting</a><br>
+
page.<br>
+
<br>
+
Click here for <a href="phenote-java-requirements.html">phenote java
requirements</a><br>
+
<br>
+
<br>
+
<br>
+
Old releases: <br>
+
<br>
+
<a href="0.9/phenote-flybase.jnlp">Phenote 0.9 for fly</a><br>
+
<a href="0.9/phenote-zfin.jnlp">Phenote (standalone) 0.9 for zfin</a><br>
+
<br>
+
<a href="0.8/phenote-flybase.jnlp">Phenote 0.8 for fly.</a><br>
+
<a href="0.8/phenote-zfin.jnlp">Phenote (standalone) 0.8 for zfin</a><br>
+
<br>
+
<a href="0.7/phenote-flybase.jnlp">Phenote 0.7 for fly.</a><br>
+
<a href="0.7/phenote-zfin.jnlp">Phenote (standalone) 0.7 for zfin</a><br>
+
<br>
+
<a href="0.6/phenote-flybase.jnlp">Phenote 0.6 with fly anatomy</a><br>
+
<br>
+
<a href="0.6/phenote-zfin.jnlp">Phenote 0.6 with zebrafish anatomy</a><br>
+
<br>
+
<a href="0.5/phenote-flybase.jnlp">Phenote 0.5 webstart for FlyBase</a><br>
+
<br>
+
<a href="0.5/phenote-zfin.jnlp">Phenote 0.5 webstart for ZFIN</a><br>
+
<br>
+
<a href="0.4/phenote-flybase.jnlp">Phenote 0.4 webstart for FlyBase</a><br>
+
<br>
+
<a href="0.4/phenote-zfin.jnlp">Phenote 0.4 webstart for ZFIN</a><br>
+
<br>
+
<a href="0.3.1/phenote-webstart.jnlp">Phenote for CToL group (0.3.1)</a>
(a special release for the CToL group that uses fish
taxonomy)<br>
+
<br>
+
<a href="0.3/phenote-webstart.jnlp">Phenote 0.3</a><br>
+
<br>
+
<a href="0.2/phenote-webstart.jnlp">Phenote 0.2</a><br>
+
<br>
+
<a href="0.1/phenote-webstart.jnlp">Phenote 0.1</a><br>
+
<br>
+
<br>
+
</body>
</html>
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