From: <ba...@us...> - 2007-01-22 19:23:45
|
Revision: 303 http://svn.sourceforge.net/obo/?rev=303&view=rev Author: balhoff Date: 2007-01-22 11:23:37 -0800 (Mon, 22 Jan 2007) Log Message: ----------- Added file adapter for exporting phenotypes to a NEXUS file. This requires the use of PATO with attribute and value slims. The adapter does not import NEXUS files. Modified Paths: -------------- phenote/trunk/obo-files/quality.obo phenote/trunk/src/java/phenote/config/Config.java Added Paths: ----------- phenote/trunk/src/java/phenote/dataadapter/nexus/ phenote/trunk/src/java/phenote/dataadapter/nexus/NEXUSAdapter.java Modified: phenote/trunk/obo-files/quality.obo =================================================================== --- phenote/trunk/obo-files/quality.obo 2007-01-20 03:18:08 UTC (rev 302) +++ phenote/trunk/obo-files/quality.obo 2007-01-22 19:23:37 UTC (rev 303) @@ -1,10 +1,13 @@ format-version: 1.0 -date: 28:11:2006 13:58 +date: 22:01:2007 16:16 saved-by: George Gkoutos -auto-generated-by: OBO-Edit 1.002 +auto-generated-by: OBO-Edit 1.100-beta16 +subsetdef: abnormal_slim "Abnormal/normal slim" subsetdef: absent_slim "Absent/present slim" -subsetdef: abnormal_slim "Abnormal/normal slim" +subsetdef: attribute_slim "Attribute slim" +subsetdef: value_slim "Value slim" default-namespace: quality +namespace-id-rule: * ID:$sequence(7,0,2147483647)$ [Term] id: PATO:0000000 @@ -14,7 +17,8 @@ [Term] id: PATO:0000001 name: quality -def: "A dependent entity that\ninheres in a bearer by virtue of how the bearer is related to other entities." [PATO :GVG] +def: "A dependent entity that inheres in a bearer by virtue of how the bearer is related to other entities." [PATO :GVG] +subset: attribute_slim [Term] id: PATO:0000002 @@ -30,6 +34,7 @@ id: PATO:0000004 name: mobility def: "A quality of moving freely." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -51,6 +56,7 @@ id: PATO:0000008 name: speed/velocity def: "A physical quality inhering in an object by virtue of the rate of change of its position." [Wikipedia:Wikipedia "http://en.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -66,6 +72,7 @@ [Term] id: PATO:0000011 name: age +subset: attribute_slim is_a: PATO:0000165 ! time [Term] @@ -82,46 +89,54 @@ id: PATO:0000014 name: color def: "A composite chromatic quality composed of hue, saturation and intensity parts." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001301 ! chromatic property [Term] id: PATO:0000015 name: color hue def: "a chromatic scalar-circular quality inhering in an object that manifests in an observer by virtue of the dominant wavelength of the visible light; may be subject to fiat divisions, typically into 7 or 8 spectra" [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001301 ! chromatic property [Term] id: PATO:0000016 name: color brightness def: "A scalar optical quality which obtains by the bearer producing the effects of light emittance in an observer." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001300 ! optical quality [Term] id: PATO:0000017 name: color saturation def: "a scalar chromatic quality that manifests by virtue of the range of wavelengths in perceived light." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001301 ! chromatic property [Term] id: PATO:0000018 name: fluorescence def: "Luminosity in which the bearer emits longer wavelength light following the absorption of shorter wavelength radiation; fluorescence is common with aromatic compounds with several rings joined together." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0001296 ! luminosity [Term] id: PATO:0000019 name: color pattern -is_obsolete: true +subset: attribute_slim +is_a: PATO:0001301 ! chromatic property [Term] id: PATO:0000020 name: relative color +subset: attribute_slim is_a: PATO:0001300 ! optical quality [Term] id: PATO:0000021 name: compatibility def: "A quality of having or lacking the ability harmonious coexistence." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -142,7 +157,9 @@ [Term] id: PATO:0000025 name: composition -def: "A monadic quality of continuant inhering in an object by virtue of the quantities or relative ratios of subparts of the inhering entity; for example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood)" [PATO :GVG] +def: "A monadic quality of continuant inhering in an object by virtue of the quantities or relative ratios of subparts of the inhering entity." [PATO :GVG] +comment: For example calcium composition (which may inhere in bone), haemoglobin composition (which may inhere in blood). +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -184,6 +201,7 @@ id: PATO:0000033 name: concentration def: "A physical quality inhering in a substance by \nvirtue of the amount of it there is mixed with another substance." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -205,6 +223,7 @@ id: PATO:0000037 name: consistency def: "A physical quality that inheres in a continuant by\nvirtue of density, firmness, or viscosity." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -216,12 +235,14 @@ id: PATO:0000039 name: direction def: "The orientation of a line in space." [: "http://thesaurus.maths.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0000040 name: distance def: "The extent of space between two objects or places." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -238,12 +259,14 @@ id: PATO:0000043 name: flavor def: "A relational quality inhering in an object or the molecules of an object, in which the molecules are perceived by a taste and odorant receptors." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001238 ! relational quality of continuant [Term] id: PATO:0000044 name: frequency def: "A physical quality which inhers to the bearer by virtue of the number of repetitive actions in a particular time." [Wikipedia:Wikipedia "http://en.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -260,41 +283,48 @@ id: PATO:0000047 name: biological sex def: "A monadic quality of continuant inhering in an organism by virtue of its ability to undergo sexual reproduction in order to differentiate the individuals or types involved." [MGED:MGED] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000048 name: hardness def: "A physical quality inhering in a bearer as the constant of proportionality of the force on its elastic body to its body's extension." [: "http://thesaurus.maths.org/"] +subset: attribute_slim related_synonym: "stiffness" [] is_a: PATO:0001018 ! physical quality [Term] id: PATO:0000049 name: intensity +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000050 name: life span def: "A time quality which is the expected maximum age." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0000165 ! time [Term] id: PATO:0000051 name: morphology def: "A quality inhering in the bearer by virtue of its size, shape and structure" [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000052 name: shape -def: "A morphology quality inhering in a bearer by virtue of the ratios of distances between its features (points, edges, surfaces and also holes etc). " [PATO :GVG] +def: "A morphology quality inhering in a bearer by virtue of the ratios of distances between its features (points, edges, surfaces and also holes etc)." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000051 ! morphology [Term] id: PATO:0000053 name: count +subset: attribute_slim is_a: PATO:0001226 ! quantitative [Term] @@ -310,28 +340,33 @@ [Term] id: PATO:0000056 name: nutritional +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000057 name: occurrence +subset: attribute_slim is_a: PATO:0001226 ! quantitative [Term] id: PATO:0000058 name: odor -def: "A relational quality inhering in an object by virtue of the molecules being are aerially dispersed and perceived by an odorant receptor. " [XX:<new dbxref>] +def: "A relational quality inhering in an object by virtue of the molecules being are aerially dispersed and perceived by an odorant receptor." [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001238 ! relational quality of continuant [Term] id: PATO:0000059 name: parental type +subset: attribute_slim is_a: PATO:0000047 ! biological sex [Term] id: PATO:0000060 name: pattern def: "A monadic quality of continuant defined by the mathematic properties of the relative position of subparts" [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -342,7 +377,8 @@ [Term] id: PATO:0000062 name: sleep pattern -is_a: PATO:0000186 ! behavioral quality +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of occurent [Term] id: PATO:0000063 @@ -363,6 +399,7 @@ id: PATO:0000066 name: pilosity def: "A quality of having hair." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -373,21 +410,25 @@ [Term] id: PATO:0000068 name: qualitative +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000069 name: deviation(from_normal) +subset: attribute_slim is_a: PATO:0000068 ! qualitative [Term] id: PATO:0000070 name: presence +subset: attribute_slim is_a: PATO:0000068 ! qualitative [Term] id: PATO:0000071 name: relative_quantity +subset: attribute_slim is_a: PATO:0001226 ! quantitative [Term] @@ -419,12 +460,14 @@ id: PATO:0000077 name: response def: "A quality inhering in a bearer by virtue of \nits reaction to a stimulus or an agent." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000078 name: rhythm -is_a: PATO:0001237 ! monadic quality of continuant +subset: attribute_slim +is_a: PATO:0001239 ! monadic quality of occurrent [Term] id: PATO:0000079 @@ -434,24 +477,26 @@ [Term] id: PATO:0000080 name: amplitude -def: "A physical quality inhering in a bearer by \nvirtue of the size of its maximum displacement from the 'normal' position, when periodic motion is taking place" [: "http://thesaurus.maths.org/"] -is_a: PATO:0000078 ! rhythm -is_a: PATO:0001018 ! physical quality +def: "A physical monadic quality of occurrent quality inhering in a bearer by virtue of the size of its maximum displacement from the 'normal' position, when periodic motion is taking place." [thesaurus.maths:thesaurus.maths "http://thesaurus.maths.org/"] +subset: attribute_slim +is_a: PATO:0001239 ! monadic quality of occurrent [Term] id: PATO:0000081 name: period -is_a: PATO:0000078 ! rhythm +subset: attribute_slim is_a: PATO:0000165 ! time [Term] id: PATO:0000082 name: persistence +subset: attribute_slim is_a: PATO:0000078 ! rhythm [Term] id: PATO:0000083 name: phase +subset: attribute_slim is_a: PATO:0000078 ! rhythm [Term] @@ -463,6 +508,7 @@ id: PATO:0000085 name: sensitivity def: "A relational quality of continuant inhering in an entity by virtue of its propensity to respond to stimulation." [PATO:GVG] +subset: attribute_slim is_a: PATO:0001238 ! relational quality of continuant [Term] @@ -623,7 +669,8 @@ [Term] id: PATO:0000117 name: size -def: "A morphology quality inhering in a bearer by virtue of its physical magnitude. " [WordNet :WordNet "wordnet.princeton.edu/"] +def: "A morphology quality inhering in a bearer by virtue of its physical magnitude." [WordNet :WordNet "wordnet.princeton.edu/"] +subset: attribute_slim is_a: PATO:0000051 ! morphology [Term] @@ -635,6 +682,7 @@ id: PATO:0000119 name: height def: "A physical quality which is equal to the vertical dimension of extension." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -651,6 +699,7 @@ id: PATO:0000122 name: length def: "A physical quality which is equal to the distance between two points." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -667,6 +716,7 @@ id: PATO:0000125 name: mass def: "A physical quality that inheres in a bearer in proportion to the amount of matter it contains." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -683,6 +733,7 @@ id: PATO:0000128 name: weight def: "A quality inhering in an object with mass near a gravitational body." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001035 ! force [Term] @@ -703,14 +754,15 @@ [Term] id: PATO:0000132 name: spatial +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000133 name: angle def: "A physical quality inhering in a figure or space formed by the junction of two lines or planes." [Wikipedia :Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0000132 ! spatial -is_a: PATO:0001018 ! physical quality [Term] id: PATO:0000134 @@ -725,12 +777,14 @@ [Term] id: PATO:0000136 name: closure +subset: attribute_slim is_a: PATO:0000132 ! spatial [Term] id: PATO:0000137 name: orientation def: "A quality of an object in which its \nlocation is defined by the angle between two axes, or an axis and another object" [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0000132 ! spatial [Term] @@ -747,12 +801,14 @@ id: PATO:0000140 name: placement def: "A spatial quality of the way in which something is placed" [PATO:gg] +subset: attribute_slim is_a: PATO:0000132 ! spatial [Term] id: PATO:0000141 name: structure -def: "A morphology quality inhering in a bearer by virtue of the relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.\n" [PATO :GVG] +def: "A morphology quality inhering in a bearer by virtue of the relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000051 ! morphology [Term] @@ -779,6 +835,7 @@ id: PATO:0000146 name: temperature def: "A physical quality of the thermal energy of a system." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -799,7 +856,8 @@ [Term] id: PATO:0000150 name: texture -def: "A morphology quality inhering in a bearer by virtue of the relative size and distribution of its surface elements or the representation or invention of the appearance of its surface. \n" [PATO :GVG] +def: "A morphology quality inhering in a bearer by virtue of the relative size and distribution of its surface elements or the representation or invention of the appearance of its surface." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000051 ! morphology [Term] @@ -811,6 +869,7 @@ id: PATO:0000152 name: threshold def: "A quality inhering in a bearer by virtue of its sensitivity towards a fixed location or value where a change is observed; upper limit." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -831,7 +890,8 @@ [Term] id: PATO:0000156 name: temporal -is_a: PATO:0001237 ! monadic quality of continuant +subset: attribute_slim +is_a: PATO:0001239 ! monadic quality of occurrent [Term] id: PATO:0000157 @@ -841,6 +901,7 @@ [Term] id: PATO:0000158 name: incidence +subset: attribute_slim is_a: PATO:0000156 ! temporal [Term] @@ -856,6 +917,7 @@ [Term] id: PATO:0000161 name: rate +subset: attribute_slim is_a: PATO:0000156 ! temporal [Term] @@ -877,6 +939,7 @@ id: PATO:0000165 name: time def: "A quality in which events occur in sequence" [XX:<new dbxref>] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -887,6 +950,7 @@ [Term] id: PATO:0000167 name: bouts +subset: attribute_slim is_a: PATO:0000165 ! time [Term] @@ -898,6 +962,7 @@ id: PATO:0000169 name: viability def: "A quality inhering in a bearer or a population by virtue of the bearer's ability or inability to survive and develop normally or the number of surviving individuals in a given population." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -978,28 +1043,33 @@ [Term] id: PATO:0000185 name: balance -is_a: PATO:0001237 ! monadic quality of continuant +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of occurent [Term] id: PATO:0000186 name: behavioral quality +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0000187 name: consumption -is_a: PATO:0001237 ! monadic quality of continuant +subset: attribute_slim +is_a: PATO:0001240 ! relational quality of occurrent [Term] id: PATO:0000188 name: coordination def: "A quality of having or lacking skilful and effective interaction of movement." [PATO :GVG] -is_a: PATO:0001237 ! monadic quality of continuant +subset: attribute_slim +is_a: PATO:0001530 ! behavioral quality of occurent [Term] id: PATO:0000189 name: discrimination def: "A quality of perceiving differences between two or more stimuli." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -1360,6 +1430,7 @@ [Term] id: PATO:0000261 name: maturity +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] @@ -1420,12 +1491,14 @@ [Term] id: PATO:0000273 name: fecundity -is_obsolete: true +subset: attribute_slim +is_a: PATO:0001434 ! reproductive quality [Term] id: PATO:0000274 name: fertility def: "A quality of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001434 ! reproductive quality [Term] @@ -1435,13 +1508,16 @@ [Term] id: PATO:0000276 -name: litter size -is_obsolete: true +name: brood size +subset: attribute_slim +related_synonym: "litter size" [] +is_a: PATO:0001496 ! brood quality [Term] id: PATO:0000277 name: female fertility def: "A fertility quality of the female of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000274 ! fertility [Term] @@ -1453,6 +1529,7 @@ id: PATO:0000279 name: male fertility def: "A fertility quality of the male of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000274 ! fertility [Term] @@ -1544,6 +1621,7 @@ id: PATO:0000297 name: arrested def: "A duration in which the end point is shorted before natural end point (prematurely finishing)." [XX:<new dbxref>] +subset: value_slim related_synonym: "incomplete" [] is_a: PATO:0001309 ! duration @@ -1556,12 +1634,15 @@ id: PATO:0000299 name: mobile def: "A mobility quality of being incapable to move freely." [PATO :GVG] +subset: value_slim is_a: PATO:0000004 ! mobility [Term] id: PATO:0000300 name: immobile def: "A mobility quality of being capable to move freely." [PATO :GVG] +subset: value_slim +related_synonym: "fixed" [] is_a: PATO:0000004 ! mobility [Term] @@ -1578,12 +1659,14 @@ id: PATO:0000303 name: fast speed def: "A speed which is relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000008 ! speed/velocity [Term] id: PATO:0000304 name: slow speed def: "A speed which is relative low." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000008 ! speed/velocity [Term] @@ -1604,11 +1687,13 @@ [Term] id: PATO:0000308 name: old +subset: value_slim is_a: PATO:0000011 ! age [Term] id: PATO:0000309 name: young +subset: value_slim is_a: PATO:0000011 ! age [Term] @@ -1650,46 +1735,54 @@ id: PATO:0000317 name: black def: "A color that lacks any hues as parts." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000318 name: blue -def: "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers;" [Dictionary:http\://dictionary.reference.com/] +def: "A color hue with low wavelength of that portion of the visible spectrum lying between green and indigo, evoked in the human observer by radiant energy with wavelengths of approximately 420 to 490 nanometers." [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000319 name: cyan +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000320 name: green def: "A color hue with medium-low wavelength of that portion of the visible spectrum lying between yellow and blue, evoked in the human observer by radiant energy with wavelengths of approximately 490 to 570 nanometers;" [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000321 name: magenta +subset: value_slim is_a: PATO:0000322 ! red [Term] id: PATO:0000322 name: red def: "A color hue with high wavelength of the long-wave end of the visible spectrum, evoked in the human observer by radiant energy with wavelengths of approximately 630 to 750 nanometers;" [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000323 name: white def: "An achromatic color of maximum lightness; the color of objects that reflect nearly all light of all visible wavelengths;" [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000324 name: yellow def: "A color hue with medium wavelength of that portion of the visible spectrum lying between orange and green, evoked in the human observer by radiant energy with wavelengths of approximately 570 to 590 nanometers" [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] @@ -1705,11 +1798,13 @@ [Term] id: PATO:0000327 name: dark +subset: value_slim is_a: PATO:0000016 ! color brightness [Term] id: PATO:0000328 name: pale +subset: value_slim related_synonym: "dull" [] is_a: PATO:0000017 ! color saturation @@ -1722,11 +1817,13 @@ id: PATO:0000330 name: irregular def: "A physical quality inhering in a bearer by virtue of lacking pattern." [PATO :GVG] +subset: value_slim is_a: PATO:0000060 ! pattern [Term] id: PATO:0000331 name: discolored +subset: value_slim is_a: PATO:0000020 ! relative color [Term] @@ -1753,11 +1850,13 @@ [Term] id: PATO:0000336 name: colored +subset: value_slim is_a: PATO:0000020 ! relative color [Term] id: PATO:0000337 name: colorless +subset: value_slim is_a: PATO:0000020 ! relative color [Term] @@ -1794,12 +1893,14 @@ id: PATO:0000344 name: compatible def: "A compatibility quality of being capable of harmonious coexistence." [PATO :GVG] +subset: value_slim is_a: PATO:0000021 ! compatibility [Term] id: PATO:0000345 name: incompatible def: "A compatibility quality of being incapable of harmonious coexistence." [PATO :GVG] +subset: value_slim is_a: PATO:0000021 ! compatibility [Term] @@ -1901,18 +2002,21 @@ id: PATO:0000365 name: down def: "A direction from a higher to a lower point." [PATO :GVG] +subset: value_slim is_a: PATO:0000039 ! direction [Term] id: PATO:0000366 name: left def: "A direction that is similar to the direction of an object to the north when it faces east." [PATO :GVG] +subset: value_slim is_a: PATO:0000039 ! direction [Term] id: PATO:0000367 name: right def: "A direction that is similar to the direction of an object to the north when it faces west." [PATO :GVG] +subset: value_slim is_a: PATO:0000039 ! direction [Term] @@ -1929,6 +2033,7 @@ id: PATO:0000370 name: up def: "A direction from a lower to a higher point." [PATO :GVG] +subset: value_slim is_a: PATO:0000039 ! direction [Term] @@ -1950,12 +2055,14 @@ id: PATO:0000374 name: long distance def: "A distance which is greater relative to the normal or average." [PATO :GVG] +subset: value_slim is_a: PATO:0000040 ! distance [Term] id: PATO:0000375 name: short distance def: "A distance which is lesser relative to the normal or average." [PATO :GVG] +subset: value_slim is_a: PATO:0000040 ! distance [Term] @@ -1982,12 +2089,14 @@ id: PATO:0000380 name: frequent def: "A frequency which is relative high." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000044 ! frequency [Term] id: PATO:0000381 name: infrequent def: "A frequency which is relative low." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000044 ! frequency [Term] @@ -1999,12 +2108,14 @@ id: PATO:0000383 name: female def: "A biological sex quality inhering in an individual that only produces gametes that can be fertilised by male gamates." [MGED:MGED] +subset: value_slim is_a: PATO:0000047 ! biological sex [Term] id: PATO:0000384 name: male def: "A biological sex quality inhering in an individual whose sex organs contain only male gametes." [MGED:MGED] +subset: value_slim is_a: PATO:0000047 ! biological sex [Term] @@ -2016,12 +2127,14 @@ id: PATO:0000386 name: hard def: "A hardness quality of being rigid and resistant to pressure." [PATO :GVG] +subset: value_slim is_a: PATO:0000048 ! hardness [Term] id: PATO:0000387 name: soft -def: "A hardness quality of giving little resistance to pressure " [PATO :GVG] +def: "A hardness quality of giving little resistance to pressure" [PATO :GVG] +subset: value_slim is_a: PATO:0000048 ! hardness [Term] @@ -2057,16 +2170,19 @@ [Term] id: PATO:0000394 name: mild +subset: value_slim is_a: PATO:0000049 ! intensity [Term] id: PATO:0000395 name: moderate +subset: value_slim is_a: PATO:0000049 ! intensity [Term] id: PATO:0000396 name: severe +subset: value_slim is_a: PATO:0000049 ! intensity [Term] @@ -2097,27 +2213,33 @@ [Term] id: PATO:0000402 name: branched +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000403 name: cleft +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000404 name: coiled +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000405 name: curled -def: "A shape quality of having parallel chains in undulate fashion on the border." [XX:<new dbxref>] +def: "A shape quality of having parallel chains in undulate fashion on the border." [PATO:] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000406 name: curved +def: "A shape quality inhering in a bearer by virtue of having or marked by a curve or smoothly rounded bend" [WordNet :WordNet "http://wordnet.princeton.edu/"] +subset: value_slim related_synonym: "curled" [] is_a: PATO:0000052 ! shape @@ -2125,46 +2247,55 @@ id: PATO:0000407 name: flat def: "A shape lacking depth." [PATO :GVG] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000408 name: globular +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000409 name: oblate +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000410 name: pinnate +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000411 name: round +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000412 name: shrunken +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000413 name: square +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000414 name: unbranched +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000415 name: uncoiled +subset: value_slim is_a: PATO:0000052 ! shape [Term] @@ -2185,11 +2316,13 @@ [Term] id: PATO:0000419 name: decreased number +subset: value_slim is_a: PATO:0000053 ! count [Term] id: PATO:0000420 name: increased number +subset: value_slim is_a: PATO:0000053 ! count [Term] @@ -2200,11 +2333,13 @@ [Term] id: PATO:0000422 name: auxotroph +subset: value_slim is_a: PATO:0000056 ! nutritional [Term] id: PATO:0000423 name: prototroph +subset: value_slim is_a: PATO:0000056 ! nutritional [Term] @@ -2220,21 +2355,25 @@ [Term] id: PATO:0000426 name: interrupted +subset: value_slim is_a: PATO:0000057 ! occurrence [Term] id: PATO:0000427 name: recurrent +subset: value_slim is_a: PATO:0000057 ! occurrence [Term] id: PATO:0000428 name: sporadic +subset: value_slim is_a: PATO:0000057 ! occurrence [Term] id: PATO:0000429 name: uninterrupted +subset: value_slim is_a: PATO:0000057 ! occurrence [Term] @@ -2255,11 +2394,13 @@ [Term] id: PATO:0000433 name: paternal +subset: value_slim is_a: PATO:0000059 ! parental type [Term] id: PATO:0000434 name: maternal +subset: value_slim is_a: PATO:0000059 ! parental type [Term] @@ -2281,7 +2422,9 @@ id: PATO:0000438 name: invariant def: "The state of not having or exhibiting variation." [Dictionary:http\://dictionary.reference.com/] +subset: value_slim related_synonym: "constant" [] +exact_synonym: "uniform" [] is_a: PATO:0001303 ! variability [Term] @@ -2293,21 +2436,25 @@ id: PATO:0000440 name: regular def: "A physical quality inhering in a bearer by virtue of having pattern." [PATO :GVG] +subset: value_slim is_a: PATO:0000060 ! pattern [Term] id: PATO:0000441 name: repetitive +subset: value_slim is_a: PATO:0000057 ! occurrence [Term] id: PATO:0000442 name: insomnia +subset: value_slim is_a: PATO:0000062 ! sleep pattern [Term] id: PATO:0000443 name: narcolepsy +subset: value_slim is_a: PATO:0000062 ! sleep pattern [Term] @@ -2359,17 +2506,20 @@ id: PATO:0000453 name: glabrous def: "A pilosity quality of having no hairs, projections, or pubescence" [PATO :GVG] +subset: value_slim is_a: PATO:0000066 ! pilosity [Term] id: PATO:0000454 name: hairy def: "A pilosity quality of being covered with hair or hairlike projections" [PATO :GVG] +subset: value_slim is_a: PATO:0000066 ! pilosity [Term] id: PATO:0000455 name: pubescent +subset: value_slim is_a: PATO:0000261 ! maturity [Term] @@ -2395,33 +2545,38 @@ [Term] id: PATO:0000460 name: abnormal +subset: abnormal_slim +subset: value_slim related_synonym: "aberrant" [] related_synonym: "atypical" [] related_synonym: "defective" [] is_a: PATO:0000069 ! deviation(from_normal) -subset: abnormal_slim [Term] id: PATO:0000461 name: normal +subset: abnormal_slim +subset: value_slim related_synonym: "average" [] is_a: PATO:0000069 ! deviation(from_normal) -subset: abnormal_slim [Term] id: PATO:0000462 name: absent +subset: absent_slim +subset: value_slim is_a: PATO:0000070 ! presence -subset: absent_slim [Term] id: PATO:0000463 name: conspicuous +subset: value_slim is_a: PATO:0000070 ! presence [Term] id: PATO:0000464 name: inconspicuous +subset: value_slim is_a: PATO:0000070 ! presence [Term] @@ -2437,12 +2592,15 @@ [Term] id: PATO:0000467 name: present +subset: absent_slim +subset: value_slim is_a: PATO:0000070 ! presence -subset: absent_slim [Term] id: PATO:0000468 name: decreased +subset: value_slim +related_synonym: "reduced" [] is_a: PATO:0000071 ! relative_quantity [Term] @@ -2453,6 +2611,7 @@ [Term] id: PATO:0000470 name: increased +subset: value_slim is_a: PATO:0000071 ! relative_quantity [Term] @@ -2539,12 +2698,14 @@ id: PATO:0000487 name: responsive def: "A quality inhering in a bearer by virtue of \nthe presence of its reaction to a stimulus or an agent." [PATO :GVG] +subset: value_slim is_a: PATO:0000077 ! response [Term] id: PATO:0000488 name: unresponsive def: "A quality inhering in a bearer by virtue of \nthe lack of its reaction to a stimulus or an agent." [PATO :GVG] +subset: value_slim is_a: PATO:0000077 ! response [Term] @@ -2595,44 +2756,51 @@ [Term] id: PATO:0000498 name: prolonged period +subset: value_slim is_a: PATO:0000081 ! period [Term] id: PATO:0000499 name: shortened period +subset: value_slim is_a: PATO:0000081 ! period [Term] id: PATO:0000500 name: advanced +subset: value_slim is_a: PATO:0000083 ! phase [Term] id: PATO:0000501 name: dark phase +subset: value_slim is_a: PATO:0000083 ! phase [Term] id: PATO:0000502 name: delayed -def: "A duration in which process ends before natural\nstart point." [XX:<new dbxref>] +def: "A duration in which process ends before natural start point." [PATO:GVG] +subset: value_slim related_synonym: "late" [] -is_a: PATO:0000083 ! phase is_a: PATO:0001309 ! duration [Term] id: PATO:0000503 name: light phase +subset: value_slim is_a: PATO:0000083 ! phase [Term] id: PATO:0000504 name: arrhythmic +subset: value_slim is_a: PATO:0000078 ! rhythm [Term] id: PATO:0000505 name: rhythmic +subset: value_slim is_a: PATO:0000078 ! rhythm [Term] @@ -2674,6 +2842,7 @@ id: PATO:0000513 name: insensitive def: "A quality of lacking sensitivity." [XX:<new dbxref>] +subset: value_slim related_synonym: "resistant" [] is_a: PATO:0000085 ! sensitivity @@ -2686,12 +2855,14 @@ id: PATO:0000515 name: tolerant def: "A resistance quality inhering in a bearer by virtue of its ability to tolarete or being insensitive to a stimulus." [PATO :GVG] +subset: value_slim is_a: PATO:0001046 ! resistance [Term] id: PATO:0000516 name: sensitive def: "A quality of having sensitivity." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000085 ! sensitivity [Term] @@ -2961,12 +3132,14 @@ id: PATO:0000569 name: short height def: "A height which is relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000119 ! height [Term] id: PATO:0000570 name: tall height def: "A height which is relative small." [PATO :GVG] +subset: value_slim is_a: PATO:0000119 ! height [Term] @@ -2983,12 +3156,14 @@ id: PATO:0000573 name: long length def: "A length which is relative large." [XX:<new dbxref>] +subset: value_slim is_a: PATO:0000122 ! length [Term] id: PATO:0000574 name: short length def: "A length which is relative small." [XX:<new dbxref>] +subset: value_slim related_synonym: "shortened" [] related_synonym: "stubby" [] is_a: PATO:0000122 ! length @@ -3012,12 +3187,14 @@ id: PATO:0000578 name: large mass def: "A mass which is relative large." [PATO :GVG] +subset: value_slim is_a: PATO:0000125 ! mass [Term] id: PATO:0000579 name: small mass def: "A mass which is relative small." [PATO :GVG] +subset: value_slim is_a: PATO:0000125 ! mass [Term] @@ -3034,32 +3211,35 @@ id: PATO:0000582 name: heavy def: "A weight which is relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000128 ! weight [Term] id: PATO:0000583 name: light weight def: "A weight which is relative low." [PATO :GVG] +subset: value_slim is_a: PATO:0000128 ! weight [Term] id: PATO:0000584 name: hypertrophic def: "A size quality inhering in a bearer by virtue of its exhibiting hypertrophy (enlargement or overgrowth of an organ or part of the body due to increased size of the constituent cells)." [MedTerms:MedTerms "www.medterms.com/"] +subset: value_slim is_a: PATO:0000117 ! size -is_a: PATO:0000141 ! structure [Term] id: PATO:0000585 name: hypotrophic def: "A size quality inhering in a bearer by virtue of the progressive degeneration of an organ or tissue caused by loss of cells." [The free dictionary:The free dictionary "www.thefreedictionary.com/"] +subset: value_slim is_a: PATO:0000117 ! size -is_a: PATO:0000141 ! structure [Term] id: PATO:0000586 name: large size def: "A size which is greater relative to the normal or average." [PATO :GVG] +subset: value_slim related_synonym: "big" [] related_synonym: "enlarged" [] related_synonym: "great" [] @@ -3069,12 +3249,14 @@ id: PATO:0000587 name: small size def: "A size which is lesser relative to the normal or average." [PATO :GVG] +subset: value_slim related_synonym: "tiny" [] is_a: PATO:0000117 ! size [Term] id: PATO:0000588 name: vestigial +subset: value_slim is_a: PATO:0000117 ! size [Term] @@ -3091,12 +3273,14 @@ id: PATO:0000591 name: thick def: "A thickness which is relative low" [PATO :GVG] +subset: value_slim is_a: PATO:0000915 ! thickness [Term] id: PATO:0000592 name: thin def: "A thickness which is relative low" [PATO :GVG] +subset: value_slim is_a: PATO:0000915 ! thickness [Term] @@ -3113,12 +3297,14 @@ id: PATO:0000595 name: large volume def: "A volume which is relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000918 ! volume [Term] id: PATO:0000596 name: small volume def: "A volume which is relative low." [PATO :GVG] +subset: value_slim is_a: PATO:0000918 ! volume [Term] @@ -3135,12 +3321,14 @@ id: PATO:0000599 name: narrow def: "A width which is relative small." [PATO :GVG] +subset: value_slim is_a: PATO:0000921 ! width [Term] id: PATO:0000600 name: wide def: "A width which is relative large." [PATO :GVG] +subset: value_slim is_a: PATO:0000921 ! width [Term] @@ -3183,17 +3371,20 @@ [Term] id: PATO:0000608 name: closed +subset: value_slim related_synonym: "blocked" [] is_a: PATO:0000136 ! closure [Term] id: PATO:0000609 name: closure incomplete +subset: value_slim is_a: PATO:0000136 ! closure [Term] id: PATO:0000610 name: open +subset: value_slim is_a: PATO:0000136 ! closure [Term] @@ -3209,69 +3400,81 @@ [Term] id: PATO:0000613 name: disoriented +subset: value_slim is_a: PATO:0000137 ! orientation [Term] id: PATO:0000614 name: oriented +subset: value_slim is_a: PATO:0000137 ! orientation [Term] id: PATO:0000615 name: anterioralized +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000616 name: asymmetrical def: "A symmetry quality inhering in a bearer by virtue of lacking symmetry." [PATO :GVG] +subset: value_slim is_a: PATO:0000965 ! symmetry [Term] id: PATO:0000617 name: bent +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000618 name: bilateral +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000619 name: crowded +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000620 name: dorsalized +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000621 name: ectopic +subset: value_slim is_a: PATO:0000140 ! placement -is_a: PATO:0000141 ! structure [Term] id: PATO:0000622 name: erect +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000623 name: exserted +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000624 name: inserted +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000625 name: inverted def: "to be completely turned about in position or direction" [PATO :GVG] +subset: value_slim exact_synonym: "backward" [] exact_synonym: "reversed" [] is_a: PATO:0000140 ! placement @@ -3279,57 +3482,68 @@ [Term] id: PATO:0000626 name: lateralized +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000627 name: localised +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000628 name: mislocalised +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000629 name: misrouted +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000630 name: posterioralized +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000631 name: prostrate +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000632 name: symmetrical def: "A symmetry quality inhering in a bearer by virtue of having symmetry." [PATO :GVG] +subset: value_slim is_a: PATO:0000965 ! symmetry [Term] id: PATO:0000633 name: uncrowded +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000634 name: unilateral +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000635 name: unlocalised +subset: value_slim is_a: PATO:0000140 ! placement [Term] id: PATO:0000636 name: ventralized +subset: value_slim is_a: PATO:0000140 ! placement [Term] @@ -3340,16 +3554,19 @@ [Term] id: PATO:0000638 name: apoptotic +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000639 name: degenerate +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000640 name: dysplastic +subset: value_slim is_a: PATO:0000141 ! structure [Term] @@ -3360,52 +3577,62 @@ [Term] id: PATO:0000642 name: fused +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000643 name: herniated +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000644 name: hyperplastic +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000645 name: hypoplastic +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000646 name: malformed +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000647 name: necrotic -def: "A viability quality inhering in a bearer by virtue of unprogrammed cell death. " [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +def: "A viability quality inhering in a bearer by virtue of unprogrammed cell death." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: value_slim is_a: PATO:0000169 ! viability [Term] id: PATO:0000648 name: obstructed +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000649 name: perforated +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000650 name: supernumerary +subset: value_slim is_a: PATO:0000053 ! count [Term] id: PATO:0000651 name: unfused +subset: value_slim is_a: PATO:0000141 ! structure [Term] @@ -3476,6 +3703,7 @@ [Term] id: PATO:0000665 name: light +subset: value_slim is_a: PATO:0000016 ! color brightness [Term] @@ -3537,12 +3765,14 @@ id: PATO:0000677 name: cold def: "A temperature which is relative low" [gg:] +subset: value_slim is_a: PATO:0000146 ! temperature [Term] id: PATO:0000678 name: hot def: "A temperature which is relative high." [gg:] +subset: value_slim is_a: PATO:0000146 ! temperature [Term] @@ -3593,16 +3823,19 @@ [Term] id: PATO:0000688 name: asynchronous +subset: value_slim is_a: PATO:0000156 ! temporal [Term] id: PATO:0000689 name: continuous +subset: value_slim is_a: PATO:0000156 ! temporal [Term] id: PATO:0000690 name: discontinuous +subset: value_slim is_a: PATO:0000156 ! temporal [Term] @@ -3613,6 +3846,7 @@ [Term] id: PATO:0000692 name: heterochronic +subset: value_slim is_a: PATO:0000156 ! temporal [Term] @@ -3623,13 +3857,15 @@ [Term] id: PATO:0000694 name: premature -def: "A duration in which the process starts before natural start point. " [XX:<new dbxref>] +def: "A duration in which the process starts before natural start point." [XX:<new dbxref>] +subset: value_slim related_synonym: "early" [] is_a: PATO:0001309 ! duration [Term] id: PATO:0000695 name: synchronous +subset: value_slim is_a: PATO:0000156 ! temporal [Term] @@ -3655,13 +3891,15 @@ [Term] id: PATO:0000700 name: rough -def: "A texture quality inhering in a bearer by virtue of its irregular surface.\n" [PATO :GVG] +def: "A texture quality inhering in a bearer by virtue of its irregular surface." [PATO :GVG] +subset: value_slim is_a: PATO:0000150 ! texture [Term] id: PATO:0000701 name: smooth def: "A texture quality inhering in a bearer by virtue of pocessing a surface free of roughness or irregularities." [PATO :GVG] +subset: value_slim is_a: PATO:0000150 ! texture [Term] @@ -3687,21 +3925,25 @@ [Term] id: PATO:0000706 name: increased threshold +subset: value_slim is_a: PATO:0000152 ! threshold [Term] id: PATO:0000707 name: low threshold +subset: value_slim is_a: PATO:0000152 ! threshold [Term] id: PATO:0000708 name: decreased threshold +subset: value_slim is_a: PATO:0000152 ! threshold [Term] id: PATO:0000709 name: high threshold +subset: value_slim is_a: PATO:0000152 ! threshold [Term] @@ -3732,11 +3974,13 @@ [Term] id: PATO:0000715 name: fast +subset: value_slim is_a: PATO:0000165 ! time [Term] id: PATO:0000716 name: slow +subset: value_slim is_a: PATO:0000165 ! time [Term] @@ -3748,12 +3992,14 @@ id: PATO:0000718 name: lethal (sensu genetics) def: "A viability quality inhering in a bearer or a population by virtue of the bearer's inability to survive and develop normally or the long term survival inability of a given population." [PATO :GVG] +subset: value_slim is_a: PATO:0000169 ! viability [Term] id: PATO:0000719 name: viable def: "A viability quality inhering in a bearer or a population by virtue of the bearer's ability to survive and develop normally or the long term survival ability of a given population." [PATO :GVG] +subset: value_slim is_a: PATO:0000169 ! viability [Term] @@ -3944,41 +4190,49 @@ [Term] id: PATO:0000757 name: balanced +subset: value_slim is_a: PATO:0000185 ! balance [Term] id: PATO:0000758 name: unbalanced +subset: value_slim is_a: PATO:0000185 ! balance [Term] id: PATO:0000759 name: bang sensitive +subset: value_slim is_a: PATO:0000186 ! behavioral quality [Term] id: PATO:0000760 name: hyperactive -is_a: PATO:0000186 ! behavioral quality +subset: value_slim +is_a: PATO:0001530 ! behavioral quality of occurent [Term] id: PATO:0000761 name: hypoactive -is_a: PATO:0000186 ! behavioral quality +subset: value_slim +is_a: PATO:0001530 ! behavioral quality of occurent [Term] id: PATO:0000762 name: impaired +subset: value_slim is_a: PATO:0000186 ! behavioral quality [Term] id: PATO:0000763 name: paralysed +subset: value_slim is_a: PATO:0000186 ! behavioral quality [Term] id: PATO:0000764 name: passive +subset: value_slim is_a: PATO:0000186 ! behavioral quality [Term] @@ -3995,42 +4249,49 @@ id: PATO:0000767 name: increased consumption def: "A consumption which is relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000187 ! consumption [Term] id: PATO:0000768 name: decreased consumption def: "A consumption which is relative low." [PATO :GVG] +subset: value_slim is_a: PATO:0000187 ! consumption [Term] id: PATO:0000769 name: coordinated def: "A coordination quality of having skilful and effective interaction of movement." [PATO :GVG] +subset: value_slim is_a: PATO:0000188 ! coordination [Term] id: PATO:0000770 name: uncoordinated def: "A coordination quality of lacking skilful and effective interaction of movement." [PATO :GVG] +subset: value_slim is_a: PATO:0000188 ! coordination [Term] id: PATO:0000771 name: aversion def: "A preference quality of disliking a perceived stimulus." [PATO :GVG] +subset: value_slim is_a: PATO:0000773 ! preference [Term] id: PATO:0000772 name: indifference def: "A preference quality of having no preference to a perceived stimulus." [PATO :GVG] +subset: value_slim is_a: PATO:0000773 ! preference [Term] id: PATO:0000773 name: preference def: "A discrimination quality of liking a perceived stimulus." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000189 ! discrimination [Term] @@ -4607,6 +4868,7 @@ id: PATO:0000888 name: female fertile def: "A female fertility quality of being capable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim is_a: PATO:0000277 ! female fertility [Term] @@ -4618,6 +4880,7 @@ id: PATO:0000890 name: male sterile def: "A male fertility quality of being incapable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim related_synonym: "male infertile" [] is_a: PATO:0000279 ! male fertility @@ -4625,12 +4888,14 @@ id: PATO:0000891 name: male fertile def: "A male fertility quality of being capable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim is_a: PATO:0000279 ! male fertility [Term] id: PATO:0000892 name: female sterile def: "A female fertility quality of being incapable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim related_synonym: "female infertile" [] is_a: PATO:0000277 ! female fertility @@ -4730,12 +4995,16 @@ [Term] id: PATO:0000911 -name: slow rate +name: decreased rate +subset: value_slim +exact_synonym: "slow rate" [] is_a: PATO:0000161 ! rate [Term] id: PATO:0000912 -name: fast rate +name: increased rate +subset: value_slim +exact_synonym: "fast rate" [] is_a: PATO:0000161 ! rate [Term] @@ -4752,6 +5021,7 @@ id: PATO:0000915 name: thickness def: "A physical quality which is equal to the dimension through an object as opposed to its length or width." [WordNet:WordNet "wordnet.princeton.edu/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -4768,6 +5038,7 @@ id: PATO:0000918 name: volume def: "A physical quality of the amount of 3-dimensional space an object occupies." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -4783,7 +5054,8 @@ [Term] id: PATO:0000921 name: width -def: "A physical quality which is equal to the distance from one side of an object to another side which is opposite. \n\n" [PATO :GVG] +def: "A physical quality which is equal to the distance from one side of an object to another side which is opposite." [PATO :GVG] +subset: attribute_slim related_synonym: "breadth" [] is_a: PATO:0001018 ! physical quality @@ -4860,16 +5132,19 @@ [Term] id: PATO:0000936 name: truncated +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000937 name: disorganized +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000938 name: organized +subset: value_slim is_a: PATO:0000141 ! structure [Term] @@ -4885,98 +5160,115 @@ [Term] id: PATO:0000941 name: vacuolated +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000942 name: underdeveloped +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000943 name: overdeveloped +subset: value_slim is_a: PATO:0000141 ! structure [Term] id: PATO:0000944 name: pointed def: "A sharp or tapered end" [PATO :GVG] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000945 name: epinastic def: "A downward bending of leaves or other plant parts." [PATO:gg] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000946 name: oblong def: "Having a somewhat elongated form with approximately parallel sides" [PATO:gg] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000947 name: elliptic def: "Elliptic shape" [PATO:gg] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000948 name: heart shaped +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000949 name: fasciated def: "Abnormally flattened or coalesced." [PATO:gg] +subset: value_slim is_a: PATO:0000052 ! shape [Term] id: PATO:0000950 name: grey def: "A color that lacks saturation." [PATO :GVG] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000951 name: purple def: "A colour that falls about midway between red and blue in hue" [Dictionary:http\://dictionary.reference.com/] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000952 name: brown +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000953 name: orange def: "A color hue with high-medium wavelengththat of that portion of the visible spectrum lying between red and yellow, evoked in the human observer by radiant energy with wavelengths of approximately 585 to 620 nanometers" [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000954 name: pink def: "A composite color with parts\nhigh redness, low blueness, high brightness and low\nsaturation" [PATO :GVG] +subset: value_slim is_a: PATO:0000014 ! color [Term] id: PATO:0000955 name: fertile def: "A fertility quality of being capable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim is_a: PATO:0000274 ! fertility [Term] id: PATO:0000956 name: sterile def: "A fertility quality of being incapable of initiating, sustaining, or supporting reproduction." [PATO :GVG] +subset: value_slim is_a: PATO:0000274 ! fertility [Term] id: PATO:0000957 name: opacity def: "An optical quality which obtains by virtue\nof the ability of the bearer to absorb visible light" [PATO:gg] +subset: attribute_slim is_a: PATO:0001300 ! optical quality [Term] @@ -5008,12 +5300,14 @@ id: PATO:0000963 name: opaque def: "Not clear; not transmitting or reflecting light or radiant energy" [PATO:gg] +subset: value_slim exact_synonym: "non-transparent" [] is_a: PATO:0000957 ! opacity [Term] id: PATO:0000964 name: transparent +subset: value_slim exact_synonym: "clear" [] is_a: PATO:0000957 ! opacity @@ -5021,6 +5315,7 @@ id: PATO:0000965 name: symmetry def: "A pattern quality of correspondence in size, shape, and relative position of parts on opposite sides of a dividing line or median plane or about a center or axis." [PATO :GVG] +subset: attribute_slim is_a: PATO:0000060 ! pattern [Term] @@ -5032,6 +5327,7 @@ id: PATO:0000967 name: undulate def: "Having a sinuate margin and rippled surface." [PATO:gg] +subset: value_slim is_a: PATO:0000052 ! shape [Term] @@ -5042,12 +5338,14 @@ [Term] id: PATO:0000969 name: dwarf +subset: value_slim is_a: PATO:0000117 ! size [Term] id: PATO:0000970 name: permeability def: "A structure quality of being cabapble of being permeated or pervaded by a liquid (as by osmosis or diffusion)." [Biology-online :Biology-online "http://www.biology-online.org/"] +subset: attribute_slim is_a: PATO:0000141 ! structure [Term] @@ -5063,7 +5361,8 @@ [Term] id: PATO:0000973 name: porosity -def: "A perneability quality of admitting the passage of gas or liquid through pores or interstices." [PATO:gg] +def: "A perneability quality of admitting the passage of gas or liquid through pores or interstices." [PATO:] +subset: attribute_slim is_a: PATO:0000970 ! permeability [Term] @@ -5110,24 +5409,28 @@ id: PATO:0000982 name: permeable def: "A quality of being capable to be permeated or pervaded by a liquid (as by osmosis or diffusion)." [Biology-online :Biology-online "http://www.biology-online.org/"] +subset: value_slim is_a: PATO:0000970 ! permeability [Term] id: PATO:0000983 name: impermeable def: "A permeability quality of being incapable of being permeated or pervaded by a liquid (as by osmosis or diffusion)." [Biology-online :Biology-online "http://www.biology-online.org/"] +subset: value_slim is_a: PATO:0000970 ! permeability [Term] id: PATO:0000984 name: porous def: "A quality of being capable of admitting the passage of gas or liquid through pores or interstices." [PATO:GVG] +subset: value_slim is_a: PATO:0000973 ! porosity [Term] id: PATO:0000985 name: nonporous def: "A quality of being incapable of admitting the passage of gas or liquid through pores or interstices." [PATO:GVG] +subset: value_slim is_a: PATO:0000973 ! porosity [Term] @@ -5164,6 +5467,7 @@ id: PATO:0000992 name: viscosity def: "A physical quality of fluids describing their internal resistance to flow" [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -5195,11 +5499,13 @@ id: PATO:0000998 name: viscous def: "A viscosity which relative high." [PATO :GVG] +subset: value_slim is_a: PATO:0000992 ! viscosity [Term] id: PATO:0000999 name: alternation +subset: value_slim is_a: PATO:0001226 ! quantitative [Term] @@ -5231,6 +5537,7 @@ id: PATO:0001005 name: latency def: "The time that elapses between a stimulus and the response to it" [PATO:gg] +subset: attribute_slim is_a: PATO:0000165 ! time [Term] @@ -5297,53 +5604,62 @@ id: PATO:0001018 name: physical quality def: "A quality that exists through action of continuants at the physical level of organisation" [PATO:GVG] +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0001019 name: density def: "A physical quality which inhers to the bearer by virtue of some influence exerted by its mass." [Wikipedia:Wikipedia "http://en.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001020 name: damage +subset: attribute_slim is_a: PATO:0001237 ! monadic quality of continuant [Term] id: PATO:0001021 name: energy def: "A physical quality inhering in a bearer by virtue of its capacity to do work." [Wikipedia:Wikipedia "http://en.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001022 name: impulse def: "A physical quality inhering in a bearer by virtue of the change in its momentum." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001023 name: momentum -def: "A physical quality inhering in a bearer by \nvirtue of its velocity multiplied by its mass\n" [PATO :GVG] +def: "A physical quality inhering in a bearer by \nvirtue of its velocity multiplied by its mass" [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001024 name: power def: "A physical quality inhering in a object by virtue of the rate of doing work." [Wikipedia:Wikipedia "http://en.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001025 name: pressure def: "A physical quality that inheres in a bearer in proportion to the amount of force per unit area it exerts." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001026 name: work def: "A physical quality which is equal to the energy transferred by a force to a moving object." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim exact_synonym: "W" [] is_a: PATO:0001018 ! physical quality @@ -5355,33 +5671,38 @@ [Term] id: PATO:0001028 name: acceleration -def: "A physical quality inhering in a bearer by \nvirtue of therate of change of its velocity in either speed or direction." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +def: "A physical quality inhering in a bearer by virtue of therate of change of its velocity in either speed or direction." [Wikipedia:Wikipedia "http://www.wikipedia.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001029 name: efficiency def: "A physical quality inhering in a bearer by \nvirtue of ratio of the output to the input." [WordNet :WordNet "wordnet.princeton.edu/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001030 name: flux def: "A physical quality that exists by virtue of the amount of flow per unit time." [PATO :GVG] -is_a: PATO:0001018 ! physical quality +subset: attribute_slim +is_a: PATO:0000156 ! temporal [Term] id: PATO:0001031 name: elasticity -def: "A physical quality inhering in a bearer by \nvirtue of the ratio of its extension to its original length. " [PATO :GVG] +def: "A physical quality inhering in a bearer by \nvirtue of the ratio of its extension to its original length." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001032 name: position def: "The particular portion of space occupied by a physical object." [XX:<new dbxref>] +subset: attribute_slim related_synonym: "location" [] -is_a: PATO:0001018 ! physical quality +is_a: PATO:0000132 ! spatial [Term] id: PATO:0001033 @@ -5392,12 +5713,14 @@ id: PATO:0001034 name: strain def: "A physical quality inhering in a bearer by \nvirtue of the relative change in its length or its volume when being stretched or squashed." [PATO :GVG] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] id: PATO:0001035 name: force def: "A physical quality inhering in a object affecting its acceleration." [: "http://thesaurus.maths.org/"] +subset: attribute_slim is_a: PATO:0001018 ! physical quality [Term] @@ -5438,6 +5761,7 @@ [Term] id: PATO:0001043 name: susceptibility +subset: attribute_slim is_a: PATO:0000085 ! sensitivity [Term] @@ -5454,6 +5778,7 @@ id: PATO:0001046 na... [truncated message content] |