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[Obo-svn-commit] SF.net SVN: obo: [117] phenote/trunk/build.xml
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From: <cm...@us...> - 2006-09-06 21:09:46
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Revision: 117
http://svn.sourceforge.net/obo/?rev=117&view=rev
Author: cmpich
Date: 2006-09-06 14:09:43 -0700 (Wed, 06 Sep 2006)
Log Message:
-----------
changed war target to point to a different dir. Added
a tag to create that directory if not present
Modified Paths:
--------------
phenote/trunk/build.xml
Modified: phenote/trunk/build.xml
===================================================================
--- phenote/trunk/build.xml 2006-09-06 19:11:08 UTC (rev 116)
+++ phenote/trunk/build.xml 2006-09-06 21:09:43 UTC (rev 117)
@@ -9,142 +9,126 @@
<project name="phenote" default="compile" basedir=".">
- <description>phenote ant build</description>
- <!-- allows for use of environment vars -->
- <property environment="env"/>
- <!-- property name="src-svn" value="./src/java" / -->
- <property name="src" value="./src/java" />
- <property name="test" value="./src/java/test" />
- <!-- where classes go -->
- <property name="classfiles" value="classfiles" />
- <property name="web-classfiles" value="${env.PHENOTE_WEB_CLASSFILES}" />
- <property name="web-conf" value="${env.PHENOTE_WEB_CONF_FILES}"/>
- <property name="web-html" value="${env.PHENOTE_WEB_HTML}"/>
- <property name="web-jars" value="${env.PHENOTE_WEB_JAR_DIR}" />
- <property name="web.xml-dir" value="${env.PHENOTE_WEB_XML_DIR}" />
-
- <property name="lib" value="jars" />
- <property name="jarfile" value="jars/phenote.jar"/>
- <property name="obo" value="obo-files" />
- <property name="conf" value="conf" />
- <!-- override this from command line with -DCONF-FILE=initial-zfin.cfg -->
- <property name="CONF_FILE" value="initial-flybase.cfg"/>
+ <description>phenote ant build</description>
+ <!-- allows for use of environment vars -->
+ <property environment="env"/>
+ <!-- property name="src-svn" value="./src/java" / -->
+ <property name="src" value="./src/java"/>
+ <property name="test" value="./src/java/test"/>
+ <!-- where classes go -->
+ <property name="classfiles" value="classfiles"/>
+ <property name="web-classfiles" value="${env.PHENOTE_WEB_CLASSFILES}"/>
+ <property name="web-conf" value="${env.PHENOTE_WEB_CONF_FILES}"/>
+ <property name="web-html" value="${env.PHENOTE_WEB_HTML}"/>
+ <property name="web-jars" value="${env.PHENOTE_WEB_JAR_DIR}"/>
+ <property name="web.xml-dir" value="${env.PHENOTE_WEB_XML_DIR}"/>
- <!-- The init target makes sure that the prerequisite directories exist. -->
- <target name="init">
- <mkdir dir="${classfiles}" />
- </target>
+ <property name="lib" value="jars"/>
+ <property name="jarfile" value="jars/phenote.jar"/>
+ <property name="obo" value="obo-files"/>
+ <property name="conf" value="conf"/>
+ <!-- override this from command line with -DCONF-FILE=initial-zfin.cfg -->
+ <property name="CONF_FILE" value="initial-flybase.cfg"/>
+ <!-- The init target makes sure that the prerequisite directories exist. -->
+ <target name="init">
+ <mkdir dir="${classfiles}"/>
+ </target>
- <!-- The classpath includes all the jar files jars dir, excluding
- jars/phenote.jar if it exists. -->
- <path id="project.classpath">
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </path>
- <path id="project.classpath2">
- <fileset dir="${lib}">
- <exclude name="phenote.jar"/>
- <exclude name="META-INF"/>
- </fileset>
- </path>
+ <!-- The classpath includes all the jar files jars dir, excluding
+jars/phenote.jar if it exists. -->
+ <path id="project.classpath">
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </path>
- <path id="project.classpath3">
- <fileset dir="${lib}">
- <patternset id="non-phenote-jars">
- <include name="**/*.jar"/>
- <exclude name="**/phenote.jar"/>
- <exclude name="test/**"/>
- </patternset>
- </fileset>
- </path>
+ <path id="project.classpath2">
+ <fileset dir="${lib}">
+ <exclude name="phenote.jar"/>
+ <exclude name="META-INF"/>
+ </fileset>
+ </path>
- <!-- The compile target runs javac on all the java files, and saves
- them into the classfiles directory. excludes="test/**" -->
- <target name="compile" depends="init">
- <javac srcdir="${src}" destdir="${classfiles}" debug="yes" excludes="test/**">
- <classpath refid="project.classpath3"/>
- </javac>
- </target>
+ <path id="project.classpath3">
+ <fileset dir="${lib}">
+ <patternset id="non-phenote-jars">
+ <include name="**/*.jar"/>
+ <exclude name="**/phenote.jar"/>
+ <exclude name="test/**"/>
+ </patternset>
+ </fileset>
+ </path>
+ <!-- The compile target runs javac on all the java files, and saves
+them into the classfiles directory. excludes="test/**" -->
+ <target name="compile" depends="init">
+ <javac srcdir="${src}" destdir="${classfiles}" debug="yes" excludes="test/**">
+ <classpath refid="project.classpath3"/>
+ </javac>
+ </target>
- <!-- runs off classfiles not jar, todo: run-jar -->
- <target name="run" depends="compile">
- <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
- <!-- arg value="-c configfilehereventually"/ -->
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
- <target name="zfin" depends="compile">
- <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
- <!-- arg value="-c configfilehereventually"/ -->
- <arg value="-c"/>
- <arg value="initial-zfin.cfg"/>
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
+ <!-- runs off classfiles not jar, todo: run-jar -->
+ <target name="run" depends="compile">
+ <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
+ <!-- arg value="-c configfilehereventually"/ -->
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
- <target name="fly" depends="compile">
- <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
- <!-- arg value="-c configfilehereventually"/ -->
- <arg value="-c"/>
- <arg value="initial-flybase.cfg"/>
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
+ <target name="zfin" depends="compile">
+ <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
+ <!-- arg value="-c configfilehereventually"/ -->
+ <arg value="-c"/>
+ <arg value="initial-zfin.cfg"/>
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
- <target name="obd" depends="compile">
- <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
- <!-- arg value="-c configfilehereventually"/ -->
- <arg value="-c"/>
- <arg value="obd.cfg"/>
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
+ <target name="fly" depends="compile">
+ <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
+ <!-- arg value="-c configfilehereventually"/ -->
+ <arg value="-c"/>
+ <arg value="initial-flybase.cfg"/>
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
- <target name="run-conf" depends="compile">
- <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
- <!-- arg value="-c configfilehereventually"/ -->
- <arg value="-c"/>
- <arg value="${CONF_FILE}"/>
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
-
+ <target name="obd" depends="compile">
+ <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
+ <!-- arg value="-c configfilehereventually"/ -->
+ <arg value="-c"/>
+ <arg value="obd.cfg"/>
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
<target name="run-jar" >
<java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
<!-- arg value="-c configfilehereventually"/ -->
@@ -156,185 +140,203 @@
</java>
</target>
+ <target name="run-conf" depends="compile">
+ <java classname="phenote.gui.Phenote" fork="yes" jvmargs="-Xmx120M">
+ <!-- arg value="-c configfilehereventually"/ -->
+ <arg value="-c"/>
+ <arg value="${CONF_FILE}"/>
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
- <target name="test" depends="build-test">
- <java classname="org.junit.runner.JUnitCore" fork="yes" jvmargs="-Xmx120M">
- <arg value="phenote.gui.TestPhenote"/>
- <classpath>
- <pathelement path="${classfiles}"/>
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </classpath>
- </java>
- </target>
- <!-- The clean target just erases the classes -->
- <target name="clean">
- <delete dir="${classfiles}"/>
- </target>
+ <target name="test" depends="build-test">
+ <java classname="org.junit.runner.JUnitCore" fork="yes" jvmargs="-Xmx120M">
+ <arg value="phenote.gui.TestPhenote"/>
+ <classpath>
+ <pathelement path="${classfiles}"/>
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </classpath>
+ </java>
+ </target>
- <!-- clean and compile everything -->
- <target name="build-all" depends="clean,compile,build-test"/>
+ <!-- The clean target just erases the classes -->
+ <target name="clean">
+ <delete dir="${classfiles}"/>
+ </target>
+ <!-- clean and compile everything -->
+ <target name="build-all" depends="clean,compile,build-test"/>
- <target name="build-test" depends="compile">
- <javac srcdir="${test}" destdir="${classfiles}" debug="yes">
- <classpath refid="project.classpath"/>
- </javac>
- </target>
- <!-- JAR The jar target compiles everything, and produces a phenote.jar in
- phenote/jars/phenote.jar. -->
- <target name="jar" depends="compile">
- <jar destfile="${jarfile}">
- <fileset dir="${classfiles}"/>
- <fileset file="${obo}/*.obo"/>
- <fileset file="${conf}/*.cfg"/>
- </jar>
- </target>
+ <target name="build-test" depends="compile">
+ <javac srcdir="${test}" destdir="${classfiles}" debug="yes">
+ <classpath refid="project.classpath"/>
+ </javac>
+ </target>
-<!-- file=${obo}/*.obo -->
+ <!-- JAR The jar target compiles everything, and produces a phenote.jar in
+ phenote/jars/phenote.jar. -->
+ <target name="jar" depends="compile">
+ <jar destfile="${jarfile}">
+ <fileset dir="${classfiles}"/>
+ <fileset file="${obo}/*.obo"/>
+ <fileset file="${conf}/*.cfg"/>
+ </jar>
+ </target>
+ <!-- file=${obo}/*.obo -->
- <target name="javadoc">
- <javadoc
- destdir="doc/api"
- author="true"
- version="true"
- use="true"
- windowtitle="Phenote API"
- package="true">
- <!-- this aint pickin everything up??? -->
- <packageset dir="${src}" defaultexcludes="no">
- <include name="phenote/*/**"/>
- <!-- exclude name="com/dummy/test/doc-files/**"/ -->
- </packageset>
+ <target name="javadoc">
+ <javadoc
+ destdir="doc/api"
+ author="true"
+ version="true"
+ use="true"
+ windowtitle="Phenote API"
+ package="true">
- <classpath refid="project.classpath"/>
+ <!-- this aint pickin everything up??? -->
+ <packageset dir="${src}" defaultexcludes="no">
+ <include name="phenote/*/**"/>
+ <!-- exclude name="com/dummy/test/doc-files/**"/ -->
+ </packageset>
- <doctitle><![CDATA[<h1>Phenote</h1>]]></doctitle>
- </javadoc>
- </target>
+ <classpath refid="project.classpath"/>
- <property name="dist" value="0.6"/>
+ <doctitle><![CDATA[<h1>Phenote</h1>]]></doctitle>
+ </javadoc>
+ </target>
- <target name="tar">
- <mkdir dir="tars/${dist}"/>
- <tar destfile="tars/${dist}/phenote-${dist}.tar">
- <tarfileset dir =".">
- <exclude name="${dist}/**"/>
- <exclude name="svn-phenote/**"/>
- <exclude name="tars/**"/>
- <exclude name="src/obo-files/**"/>
- <exclude name="*.tar"/>
- <exclude name="*.jar"/>
- <exclude name="garbage/**"/>
- <exclude name="oldjars/**"/>
- <exclude name="src/java/**"/>
- <exclude name="web-classfiles/**"/>
- <exclude name="web-interface/**"/>
- <exclude name="web-deployment/**"/>
- </tarfileset>
- </tar>
- <gzip zipfile="tars/${dist}/phenote-${dist}.tar.gz" src="tars/${dist}/phenote-${dist}.tar"/>
- </target>
+ <property name="dist" value="0.6"/>
- <target name="tar-source">
- <mkdir dir="tars/${dist}"/>
- <tar destfile="tars/${dist}/phenote-${dist}-src.tar">
- <tarfileset dir =".">
- <exclude name="${dist}/**"/>
- <exclude name="svn-phenote/**"/>
- <exclude name="tars/**"/>
- <exclude name="src/obo-files/**"/>
- <!-- for now take out go as its 8.5M & not being used yet -->
- <exclude name="obo-files/gene_ontology.obo"/>
- <exclude name="*.tar"/>
- <exclude name="*.jar"/>
- <exclude name="garbage/**"/>
- <exclude name="oldjars/**"/>
- <!-- exclude name="jars/phenote.jar"/ -->
- <exclude name="doc/**"/>
- <exclude name="classfiles/**"/>
- <exclude name="web-classfiles/**"/>
- <exclude name="web-interface/**"/>
- <exclude name="web-deployment/**"/>
- </tarfileset>
- </tar>
- <gzip zipfile="tars/${dist}/phenote-${dist}-src.tar.gz" src="tars/${dist}/phenote-${dist}-src.tar"/>
- </target>
+ <target name="tar">
+ <mkdir dir="tars/${dist}"/>
+ <tar destfile="tars/${dist}/phenote-${dist}.tar">
+ <tarfileset dir=".">
+ <exclude name="${dist}/**"/>
+ <exclude name="svn-phenote/**"/>
+ <exclude name="tars/**"/>
+ <exclude name="src/obo-files/**"/>
+ <exclude name="*.tar"/>
+ <exclude name="*.jar"/>
+ <exclude name="garbage/**"/>
+ <exclude name="oldjars/**"/>
+ <exclude name="src/java/**"/>
+ <exclude name="web-classfiles/**"/>
+ <exclude name="web-interface/**"/>
+ <exclude name="web-deployment/**"/>
+ </tarfileset>
+ </tar>
+ <gzip zipfile="tars/${dist}/phenote-${dist}.tar.gz" src="tars/${dist}/phenote-${dist}.tar"/>
+ </target>
- <target name="gzip-tar">
- <gzip zipfile="tars/${dist}/phenote-${dist}.tar.gz" src="tars/${dist}/phenote-${dist}.tar"/>
- </target>
+ <target name="tar-source">
+ <mkdir dir="tars/${dist}"/>
+ <tar destfile="tars/${dist}/phenote-${dist}-src.tar">
+ <tarfileset dir=".">
+ <exclude name="${dist}/**"/>
+ <exclude name="svn-phenote/**"/>
+ <exclude name="tars/**"/>
+ <exclude name="src/obo-files/**"/>
+ <!-- for now take out go as its 8.5M & not being used yet -->
+ <exclude name="obo-files/gene_ontology.obo"/>
+ <exclude name="*.tar"/>
+ <exclude name="*.jar"/>
+ <exclude name="garbage/**"/>
+ <exclude name="oldjars/**"/>
+ <!-- exclude name="jars/phenote.jar"/ -->
+ <exclude name="doc/**"/>
+ <exclude name="classfiles/**"/>
+ <exclude name="web-classfiles/**"/>
+ <exclude name="web-interface/**"/>
+ <exclude name="web-deployment/**"/>
+ </tarfileset>
+ </tar>
+ <gzip zipfile="tars/${dist}/phenote-${dist}-src.tar.gz" src="tars/${dist}/phenote-${dist}-src.tar"/>
+ </target>
- <target name="compile-servlet">
- <javac srcdir="${src}" destdir="${web-classfiles}" debug="yes" excludes="test/**">
- <classpath refid="project.classpath3"/>
- </javac>
- </target>
+ <target name="gzip-tar">
+ <gzip zipfile="tars/${dist}/phenote-${dist}.tar.gz" src="tars/${dist}/phenote-${dist}.tar"/>
+ </target>
- <!-- web-deployment & web-config-files should be a symoblic link to ones web site -->
- <target name="web-deployment" depends="compile-servlet">
- <copy todir="${web-html}">
- <fileset dir="src/web"/>
- </copy>
- <copy todir="${web-conf}">
- <fileset dir="conf">
- <include name="*.cfg"/>
- </fileset>
- </copy>
- <copy todir="${web-conf}">
- <fileset dir="obo-files" />
- </copy>
- <copy todir="${web-jars}">
- <fileset dir="${lib}">
- <include name="*.jar"/>
- <exclude name="phenote.jar"/>
- </fileset>
- </copy>
- <copy todir="${web.xml-dir}">
- <fileset file="src/web/WEB-INF/web.xml" />
- </copy>
- </target>
+ <target name="compile-servlet">
+ <javac srcdir="${src}" destdir="${web-classfiles}" debug="yes" excludes="test/**">
+ <classpath refid="project.classpath3"/>
+ </javac>
+ </target>
- <target name="war" depends="jar">
- <war destfile="war-deployment-link/phenote.war" webxml="src/web/web.xml">
- <fileset dir="src/web"/>
- <lib dir="${lib}"/>
- <classes dir="${classfiles}" />
- <zipfileset dir="${obo}"/> <!-- prefix="obo-files"/ ??? -->
- <zipfileset dir="${conf}"/>
- </war>
- </target>
+ <!-- web-deployment & web-config-files should be a symoblic link to ones web site -->
+ <target name="web-deployment" depends="compile-servlet">
+ <copy todir="${web-html}">
+ <fileset dir="src/web"/>
+ </copy>
+ <copy todir="${web-conf}">
+ <fileset dir="conf">
+ <include name="*.cfg"/>
+ </fileset>
+ </copy>
+ <copy todir="${web-conf}">
+ <fileset dir="obo-files"/>
+ </copy>
+ <copy todir="${web-jars}">
+ <fileset dir="${lib}">
+ <include name="*.jar"/>
+ <exclude name="phenote.jar"/>
+ </fileset>
+ </copy>
+ <copy todir="${web.xml-dir}">
+ <fileset file="src/web/WEB-INF/web.xml"/>
+ </copy>
+ </target>
- <target name="war-clean">
- <delete file="war-deployment-link/phenote.war"/>
- </target>
+ <target name="war" depends="jar, war-clean">
+ <mkdir dir="war-deployment"/>
+ <war destfile="war-deployment/phenote.war" webxml="src/web/WEB-INF/web.xml">
+ <fileset dir="src/web"/>
+ <lib dir="${lib}"/>
+ <classes dir="${classfiles}"/>
+ <zipfileset dir="${obo}"/>
+ <!-- prefix="obo-files"/ ??? -->
+ <zipfileset dir="${conf}"/>
+ </war>
+ </target>
- <target name="war-no-jar-depend">
- <delete file="war-deployment-link/phenote.war"/>
- <war destfile="war-deployment-link/phenote.war" webxml="src/web/web.xml">
- <fileset dir="src/web"/>
- <lib dir="${lib}"/>
- <classes dir="${classfiles}" />
- <zipfileset dir="${obo}"/> <!-- prefix="obo-files"/ ??? -->
- <zipfileset dir="${conf}"/>
- </war>
- </target>
-
- <taskdef name="xmlbean" classname="org.apache.xmlbeans.impl.tool.XMLBean" classpath="${lib}/xbean.jar" />
+ <target name="war-clean">
+ <delete dir="war-deployment"/>
+ </target>
-<!-- classgendir="${build.dir}" - if not doing jar but classes, schema is directory
+ <target name="war-no-jar-depend">
+ <delete file="war-deployment/phenote.war"/>
+ <war destfile="war-deployment/phenote.war" webxml="src/web/WEB-INF/web.xml">
+ <fileset dir="src/web"/>
+ <lib dir="${lib}"/>
+ <classes dir="${classfiles}"/>
+ <zipfileset dir="${obo}"/>
+ <!-- prefix="obo-files"/ ??? -->
+ <zipfileset dir="${conf}"/>
+ </war>
+ </target>
+
+ <taskdef name="xmlbean" classname="org.apache.xmlbeans.impl.tool.XMLBean" classpath="${lib}/xbean.jar"/>
+
+ <!-- classgendir="${build.dir}" - if not doing jar but classes, schema is directory
where xsd files are (conf) -->
- <target name="xml-beans">
- <xmlbean schema="${conf}" destfile="${lib}/phenotexmlbeans.jar" classpath="${project.classpath3}"
- failonerror="true" javasource="1.5" >
- </xmlbean>
- </target>
+ <target name="xml-beans">
+ <xmlbean schema="${conf}" destfile="${lib}/phenotexmlbeans.jar" classpath="${project.classpath3}"
+ failonerror="true" javasource="1.5">
+ </xmlbean>
+ </target>
</project>
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