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[Obo-discuss] Re: Obo-discuss digest, Vol 1 #119 - 3 msgs
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From: Jonathan B. <j....@ed...> - 2005-12-23 10:11:13
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Stuart Aitken (st...@in...) is working on an owl/protoge translator within the COBrA environment - but I am not sure if it is yet ready Jonathan Bard > Send Obo-discuss mailing list submissions to > obo...@li... > > To subscribe or unsubscribe via the World Wide Web, visit > https://lists.sourceforge.net/lists/listinfo/obo-discuss > or, via email, send a message with subject or body 'help' to > obo...@li... > > You can reach the person managing the list at > obo...@li... > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Obo-discuss digest..." > > > Today's Topics: > > 1. Disease Ontology in OWL format (Shuaib Karim) > 2. Re: Disease Ontology in OWL format (Jyotishman Pathak) > 3. Re: Disease Ontology in OWL format (Jyotishman Pathak) > > --__--__-- > > Message: 1 > From: "Shuaib Karim" <sk...@if...> > To: <obo...@li...> > Date: Thu, 22 Dec 2005 15:07:10 +0100 > Subject: [Obo-discuss] Disease Ontology in OWL format > Reply-To: obo...@li... > > This is a multi-part message in MIME format. > > ------=_NextPart_000_0001_01C60709.62424C50 > Content-Type: text/plain; > charset="us-ascii" > Content-Transfer-Encoding: 7bit > > Hi, > For my project (OWL-DL based), i need to import the Disease Ontology which > is in OBO format. Is it also available in OWL format, so that i can sue it > directly in Protege or in my code. My aim is to make a connection between > the user inpairments and the interface components so as to provide a > customized interface based upon his/her impairments. > > One soulution is to write the transformer for OBO-OWL myself. Is there some > other option. > > With thanks, > > Regards, > > Shuaib Karim > > ------=_NextPart_000_0001_01C60709.62424C50 > Content-Type: text/html; > charset="us-ascii" > Content-Transfer-Encoding: quoted-printable > > <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN"> > <HTML><HEAD> > <META http-equiv=3DContent-Type content=3D"text/html; = > charset=3Dus-ascii"> > <META content=3D"MSHTML 6.00.2900.2802" name=3DGENERATOR></HEAD> > <BODY> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2>Hi,</FONT></SPAN></DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial size=3D2>For my = > project=20 > (OWL-DL based), i need to import the Disease Ontology which is in OBO = > format. Is=20 > it also available in OWL format, so that i can sue it directly in = > Protege or in=20 > my code. My aim is to make a connection between the user inpairments and = > the=20 > interface components so as to provide a customized interface based upon = > his/her=20 > impairments.</FONT></SPAN></DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2></FONT></SPAN> </DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial size=3D2>One = > soulution is to=20 > write the transformer for OBO-OWL myself. Is there some other=20 > option.</FONT></SPAN></DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2></FONT></SPAN> </DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial size=3D2>With=20 > thanks,</FONT></SPAN></DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2></FONT></SPAN> </DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2>Regards,</FONT></SPAN></DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial=20 > size=3D2></FONT></SPAN> </DIV> > <DIV><SPAN class=3D578050214-22122005><FONT face=3DArial size=3D2>Shuaib = > > Karim</FONT></SPAN></DIV></BODY></HTML> > > ------=_NextPart_000_0001_01C60709.62424C50-- > > > > --__--__-- > > Message: 2 > Date: Thu, 22 Dec 2005 12:49:09 -0600 > From: Jyotishman Pathak <jyo...@gm...> > To: obo...@li... > Subject: Re: [Obo-discuss] Disease Ontology in OWL format > Cc: sk...@if... > Reply-To: obo...@li... > > ------=_Part_8344_5905809.1135277349151 > Content-Type: text/plain; charset=ISO-8859-1 > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > > You might want to check the following: > > http://gong.man.ac.uk/downloads/ > > http://www.godatabase.org/dev/doc/mapping-obo-to-owl.html > > - Jyotishman Pathak > > > > On 12/22/05, Shuaib Karim <sk...@if...> wrote: >> >> Hi, >> For my project (OWL-DL based), i need to import the Disease Ontology whic= > h >> is in OBO format. Is it also available in OWL format, so that i can sue i= > t >> directly in Protege or in my code. My aim is to make a connection between >> the user inpairments and the interface components so as to provide a >> customized interface based upon his/her impairments. >> >> One soulution is to write the transformer for OBO-OWL myself. Is there >> some other option. >> >> With thanks, >> >> Regards, >> >> Shuaib Karim >> > > ------=_Part_8344_5905809.1135277349151 > Content-Type: text/html; charset=ISO-8859-1 > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > > You might want to check the following:<br><br><a href=3D"http://gong.man.ac= > .uk/downloads/">http://gong.man.ac.uk/downloads/</a><br><br><a href=3D"http= > ://www.godatabase.org/dev/doc/mapping-obo-to-owl.html">http://www.godatabas= > e.org/dev/doc/mapping-obo-to-owl.html > </a><br><br>- Jyotishman Pathak<br><br><br><br><div><span class=3D"gmail_qu= > ote">On 12/22/05, <b class=3D"gmail_sendername">Shuaib Karim</b> <<a hre= > f=3D"mailto:sk...@if...">sk...@if...</a>> wrote:= > </span> > <blockquote class=3D"gmail_quote" style=3D"border-left: 1px solid rgb(204, = > 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"> > > > > > <div><span><font face=3D"Arial" size=3D"2">Hi,</font></span></div> > <div><span><font face=3D"Arial" size=3D"2">For my project=20 > (OWL-DL based), i need to import the Disease Ontology which is in OBO forma= > t. Is=20 > it also available in OWL format, so that i can sue it directly in Protege o= > r in=20 > my code. My aim is to make a connection between the user inpairments and th= > e=20 > interface components so as to provide a customized interface based upon his= > /her=20 > impairments.</font></span></div> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">One soulution is to=20 > write the transformer for OBO-OWL myself. Is there some other=20 > option.</font></span></div> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">With=20 > thanks,</font></span></div> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">Regards,</font></span></div><spa= > n class=3D"sg"> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">Shuaib=20 > Karim</font></span></div> > > </span></blockquote></div><br> > > ------=_Part_8344_5905809.1135277349151-- > > > --__--__-- > > Message: 3 > Date: Thu, 22 Dec 2005 16:08:15 -0600 > From: Jyotishman Pathak <jyo...@gm...> > To: Shuaib Karim <sk...@if...> > Subject: Re: [Obo-discuss] Disease Ontology in OWL format > Cc: obo...@li... > Reply-To: obo...@li... > > ------=_Part_11261_20584539.1135289295750 > Content-Type: text/plain; charset=ISO-8859-1 > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > > You might to contact Dr. Robert [1] and see if he (or someone else) can hel= > p > you with the download issue. > > HTH, > - Jyoti > > [1] http://www.cs.man.ac.uk/~stevensr/ > > > > On 12/22/05, Shuaib Karim <sk...@if...> wrote: >> >> Hi, >> Thanks for the response. >> Infact i had checked the second resource. After doing a scan of the code, >> i had the feeling that it is incomplete. Maybe i am wrong. >> For the first link, the download options are not clickable. >> >> Regards, >> >> Shuaib Karim >> >> ------------------------------ >> *From:* Jyotishman Pathak [mailto:jyo...@gm...] >> *Sent:* Thursday, December 22, 2005 7:49 PM >> *To:* obo...@li... >> *Cc:* sk...@if... >> *Subject:* Re: [Obo-discuss] Disease Ontology in OWL format >> >> You might want to check the following: >> >> http://gong.man.ac.uk/downloads/ >> >> http://www.godatabase.org/dev/doc/mapping-obo-to-owl.html >> >> - Jyotishman Pathak >> >> >> >> On 12/22/05, Shuaib Karim <sk...@if...> wrote: >> > >> > Hi, >> > For my project (OWL-DL based), i need to import the Disease Ontology >> > which is in OBO format. Is it also available in OWL format, so that i c= > an >> > sue it directly in Protege or in my code. My aim is to make a connectio= > n >> > between the user inpairments and the interface components so as to prov= > ide a >> > customized interface based upon his/her impairments. >> > >> > One soulution is to write the transformer for OBO-OWL myself. Is there >> > some other option. >> > >> > With thanks, >> > >> > Regards, >> > >> > Shuaib Karim >> > >> >> > > ------=_Part_11261_20584539.1135289295750 > Content-Type: text/html; charset=ISO-8859-1 > Content-Transfer-Encoding: quoted-printable > Content-Disposition: inline > > You might to contact Dr. Robert [1] and see if he (or someone else) can hel= > p you with the download issue. <br><br>HTH,<br>- Jyoti<br><br>[1] <a href= > =3D"http://www.cs.man.ac.uk/~stevensr/">http://www.cs.man.ac.uk/~stevensr/<= > /a> > <br><br><br><br><div><span class=3D"gmail_quote">On 12/22/05, <b class=3D"g= > mail_sendername">Shuaib Karim</b> <<a href=3D"mailto:skarim@ifs.tuwien.a= > c.at">sk...@if...</a>> wrote:</span><blockquote class=3D"gma= > il_quote" style=3D"border-left: 1px solid rgb(204, 204, 204); margin: 0pt 0= > pt 0pt 0.8ex; padding-left: 1ex;"> > > > > > > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">Hi,</font></span></div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">Thanks for the response.</font></span></div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">Infact i had checked the second resource. After doing a=20 > scan of the code, i had the feeling that it is incomplete. Maybe i am=20 > wrong.</font></span></div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">For the first link, the download options are not=20 > clickable.</font></span></div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2"></font></span> </div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">Regards,</font></span></div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2"></font></span> </div> > <div dir=3D"ltr" align=3D"left"><span><font color=3D"#0000ff" face=3D"Arial= > " size=3D"2">Shuaib Karim</font></span></div><br> > <div dir=3D"ltr" align=3D"left" lang=3D"en-us"> > <hr> > <font face=3D"Tahoma" size=3D"2"><b>From:</b> Jyotishman Pathak=20 > [mailto:<a href=3D"mailto:jyo...@gm..." target=3D"_blank" onclick= > =3D"return top.js.OpenExtLink(window,event,this)">jyo...@gm...</a>]= > <br><b>Sent:</b> Thursday, December 22, 2005 7:49=20 > PM<br><b>To:</b> <a href=3D"mailto:obo...@li..." targe= > t=3D"_blank" onclick=3D"return top.js.OpenExtLink(window,event,this)">obo-d= > is...@li...</a><br><b>Cc:</b>=20 > <a href=3D"mailto:sk...@if..." target=3D"_blank" onclick=3D"ret= > urn top.js.OpenExtLink(window,event,this)">sk...@if...</a><br><= > b>Subject:</b> Re: [Obo-discuss] Disease Ontology in=20 > OWL format<br></font><br></div><div><span class=3D"q" id=3D"q_10854750964f4= > cd5_1"> > <div></div>You might want to check the following:<br><br><a href=3D"http://= > gong.man.ac.uk/downloads/" target=3D"_blank" onclick=3D"return top.js.OpenE= > xtLink(window,event,this)">http://gong.man.ac.uk/downloads/</a><br><br><a h= > ref=3D"http://www.godatabase.org/dev/doc/mapping-obo-to-owl.html" target=3D= > "_blank" onclick=3D"return top.js.OpenExtLink(window,event,this)"> > http://www.godatabase.org/dev/doc/mapping-obo-to-owl.html=20 > </a><br><br>- Jyotishman Pathak<br><br><br><br> > <div><span class=3D"gmail_quote">On 12/22/05, <b class=3D"gmail_sendername"= >> Shuaib=20 > Karim</b> <<a href=3D"mailto:sk...@if..." target=3D"_blank" = > onclick=3D"return top.js.OpenExtLink(window,event,this)">skarim@ifs.tuwien.= > ac.at</a>>=20 > wrote:</span>=20 > <blockquote class=3D"gmail_quote" style=3D"border-left: 1px solid rgb(204, = > 204, 204); margin: 0pt 0pt 0pt 0.8ex; padding-left: 1ex;"> > <div><span><font face=3D"Arial" size=3D"2">Hi,</font></span></div> > <div><span><font face=3D"Arial" size=3D"2">For my project (OWL-DL based),= > i need to=20 > import the Disease Ontology which is in OBO format. Is it also available = > in=20 > OWL format, so that i can sue it directly in Protege or in my code. My ai= > m is=20 > to make a connection between the user inpairments and the interface compo= > nents=20 > so as to provide a customized interface based upon his/her=20 > impairments.</font></span></div> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">One soulution is to write the = > transformer=20 > for OBO-OWL myself. Is there some other option.</font></span></div> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">With thanks,</font></span></di= > v> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">Regards,</font></span></div><s= > pan> > <div><span><font face=3D"Arial" size=3D"2"></font></span> </div> > <div><span><font face=3D"Arial" size=3D"2">Shuaib=20 > Karim</font></span></div></span></blockquote></div><br> > > </span></div></blockquote></div><br> > > ------=_Part_11261_20584539.1135289295750-- > > > > --__--__-- > > _______________________________________________ > Obo-discuss mailing list > Obo...@li... > https://lists.sourceforge.net/lists/listinfo/obo-discuss > > > End of Obo-discuss Digest > -- Professor Jonathan Bard Bioinformatics, Medical School University of Edinburgh, EH8 9XD, UK T: 44/0-131-650-3107 |