Re: [Obo-discuss] Annotating GO and OBO Files

[Suzanna L. <su...@fr...>]

Hi Simon,

I'd be curious which mandatory fields are giving you grief.
Perhaps if you told us this we can figure out a solution.
I am having trouble imagining what the difficulty is.

later, S

Simon Cross wrote:

>Greetings,
>
>We're in the process of creating GO flat file and GO OBO file versions
>of the eVOC ontologies
>(http://obo.sourceforge.net/cgi-bin/detail.cgi?evoc or
>http://www.sanbi.ac.za/evoc/).  We would like to annotate the terms with
>cDNA libraries but it seems neither the GO flat file nor the newer GO
>OBO file formats make provision for this.
>
>I am aware of the GO annotation file format but that is designed for
>linking genes or gene products to terms and is not really flexible
>enough for out purposes.  Specifically there are numerous mandatory
>fields which we can't assign useful values to.
>
>How are other OBO people handling annotations when using the GO
>formats?  Or other formats for that matter?
>
>Schiavo
>Simon Cross
>
>
>
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