[Obo-envo] Fwd: Bad GAZ term?

[Pankaj J. (OSU) <jai...@sc...>]

Chris,

Can you check. Either there is a cycle issue or ~70 children terms with 
located_in and partial_overlaps relationship.

Pankaj.

-------- Original Message --------
Subject: Bad GAZ term?
Date: Fri, 27 Jan 2012 18:25:22 +0000
From: Youens-Clark, Ken <kc...@cs...>
To: Pankaj Jaiswal (OSU) <jai...@sc...>
CC: Vindhya Amarasinghe <ama...@sc...>, "van Buren, 
Peter" <van...@cs...>, Palitha Dharmawardhana 
<dha...@sc...>

Pankaj,

I'm looking into some particularly crippling queries against our 
servers.  Peter forwarded me this one:

On Jan 11, 2012, at 10:43 AM, Peter Van Buren wrote:

Here's another one that causes issues:

180.76.6.21 www.gramene.org<http://www.gramene.org/> GET 
/db/ontology/search?id=GAZ:00002564 HTTP/1.1

We just had two of these taking up ~ 20GB or ram.

Looking into it, I suspect there is a circular relationship in the 
term's parentage.  Do you have a way of checking this?  This page:

http://dev.gramene.org/db/ontology/search?id=GAZ:00002564

Never loads because of what looks to me like an infinite recursion while 
querying for the inheritance tree.

--
Ken Youens-Clark
kc...@cs...<mailto:kc...@cs...>
Ware Lab/CSHL/USDA-ARS