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[Obo-phenotype-commits] obo/ontology/phenotype human_disease.obo, 1.311, 1.312 mosquito_insecticide_resistance.obo, 1.991, 1.992
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From: Seth C. <sjc...@us...> - 2010-11-30 08:02:08
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv32324/phenotype Modified Files: human_disease.obo mosquito_insecticide_resistance.obo Log Message: Automated file update Index: human_disease.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/human_disease.obo,v retrieving revision 1.311 retrieving revision 1.312 diff -C2 -d -r1.311 -r1.312 *** human_disease.obo 25 Nov 2010 08:02:02 -0000 1.311 --- human_disease.obo 30 Nov 2010 08:01:54 -0000 1.312 *************** *** 1,4 **** format-version: 1.2 ! date: 24:11:2010 13:20 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" --- 1,4 ---- format-version: 1.2 ! date: 29:11:2010 16:42 auto-generated-by: OBO-Edit 2.1-beta4 subsetdef: gram-negative_bacterial_infectious_disease "gram-negative bacterial infectious disease" *************** *** 1211,1215 **** id: DOID:0050188 name: coxsackievirus encephalitis ! def: "A viral encephalitis that involves infection caused by Human enterovirus A or B. The symptoms include reduced level of consciousness, confusion, irritability, seizures and coma." [url:http\://books.google.com/books?id=SRpQyCQuxtUC&pg=PA148&lpg#v=onepage&q=&f=false, url:http\://www.ncbi.nlm.nih.gov/pubmed/14464001] is_a: DOID:10545 ! coxsackievirus infectious disease is_a: DOID:646 ! viral encephalitis --- 1211,1215 ---- id: DOID:0050188 name: coxsackievirus encephalitis ! def: "A viral encephalitis and is_a coxsackievirus infectious disease that involves inflammation located_in brain, has_agent group A coxsackievirus or has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom reduced level of consciousness, has_symptom confusion, has_symptom irritability, has_symptom seizures, and has_symptom coma." [url:http\://books.google.com/books?id=SRpQyCQuxtUC&pg=PA148&lpg#v=onepage&q=&f=false, url:http\://www.ncbi.nlm.nih.gov/pubmed/14464001] is_a: DOID:10545 ! coxsackievirus infectious disease is_a: DOID:646 ! viral encephalitis *************** *** 1218,1222 **** id: DOID:0050189 name: polioencephalitis ! def: "A viral encephalitis that involves infection caused by polioviruses. The symptoms include tremors, nystagmus, loss of conjugate eye movements, muscle rigidity, hemiparesis and coma." [url:http\://www.ncbi.nlm.nih.gov/pubmed/13436875] is_a: DOID:4808 ! Enterovirus infectious disease is_a: DOID:646 ! viral encephalitis --- 1218,1222 ---- id: DOID:0050189 name: polioencephalitis ! def: "A viral encephalitis and is_a Enterovirus infectious disease that results_in inflammation located_in brain, has_agent polioviruses, which are transmitted_by ingestion of food contaminated with feces. The infection has_symptom tremors, has_symptom nystagmus, has_symptom loss of conjugate eye movements, has_symptom muscle rigidity, has_symptom hemiparesis, and has_symptom coma." [url:http\://www.ncbi.nlm.nih.gov/pubmed/13436875] is_a: DOID:4808 ! Enterovirus infectious disease is_a: DOID:646 ! viral encephalitis *************** *** 10560,10567 **** --- 10560,10569 ---- id: DOID:10535 name: coxsackie myocarditis + def: "A myocarditis and is_a coxsackie carditis that results_in inflammation located_in myocardium, has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom fever, has_symptom lethargy, has_symptom heart failure, has_symptom pallor, has_symptom cyanosis, has_symptom dyspnea, has_symptom tachycardia, and has_symptom enlargement of heart." [url:http\://ccdm.unboundmedicine.com/ccdm/ub/view/Communicable-Diseases/460229/all/coxsackievirus_carditis_] xref: ICD9CM_2010:074.23 xref: SNOMEDCT_2010_1_31:37217002 xref: UMLS_CUI:C0153106 is_a: DOID:1805 ! coxsackie carditis + is_a: DOID:820 ! myocarditis [Term] *************** *** 10695,10698 **** --- 10697,10701 ---- name: coxsackievirus infectious disease alt_id: DOID:10546 + def: "An Enterovirus infectious disease that results_in infection, has_agent group A coxsackievirus or has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom paralysis, has_symptom myositis, and has_symptom degeneration of neuronal tissue." [url:http\://en.wikipedia.org/wiki/Coxsackievirus] xref: MSH2010_2010_02_22:D003384 xref: SNOMEDCT_2010_1_31:154355005 *************** *** 14866,14870 **** id: DOID:10881 name: hand, foot and mouth disease ! synonym: "Hand foot and mouth disease" EXACT [SNOMEDCT_2005_07_31:154357002] synonym: "Vesicular stomatitis and exanthem" EXACT [MTHICD9_2006:074.3] xref: ICD9CM_2010:074.3 --- 14869,14873 ---- id: DOID:10881 name: hand, foot and mouth disease ! def: "A skin disease and is_a Enterovirus infectious disease that results_in infection located_in skin, has_agent Human coxsackievirus A16 or has_agent Human enterovirus 71, which are transmitted_by contaminated fomites, and transmitted_by contact with nose and throat secretions, saliva, blister fluid and stool of infected persons. The infection has_symptom fever, has_symptom poor appetite, has_symptom malaise, has_symptom sore throat, has_symptom painful sores in the mouth, and has_symptom skin rash on the palms of the hands and soles of the feet." [url:http\://www.cdc.gov/ncidod/dvrd/revb/enterovirus/hfhf.htm] synonym: "Vesicular stomatitis and exanthem" EXACT [MTHICD9_2006:074.3] xref: ICD9CM_2010:074.3 *************** *** 14876,14885 **** xref: SNOMEDCT_2010_1_31:67171006 xref: UMLS_CUI:C0018572 - is_a: DOID:10545 ! coxsackievirus infectious disease is_a: DOID:37 ! skin disease [Term] id: DOID:10882 name: epidemic pleurodynia synonym: "Epidemic pleurisy" EXACT [SNOMEDCT_2005_07_31:154356006] synonym: "Epidemic, myositis" EXACT [MTHICD9_2006:074.1] --- 14879,14893 ---- xref: SNOMEDCT_2010_1_31:67171006 xref: UMLS_CUI:C0018572 is_a: DOID:37 ! skin disease + is_a: DOID:4808 ! Enterovirus infectious disease [Term] id: DOID:10882 name: epidemic pleurodynia + def: "A muscle tissue disease and is_a coxsackievirus infectious disease that results_in necrosis located_in intercostal muscle, has_agent group B coxsackievirus. The infection has_symptom severe chest pain, has_symptom fever, has_symptom malaise, has_symptom pleuritis, and has_symptom headache." [url:http\://emedicine.medscape.com/article/300049-overview] + synonym: "Bamble disease" EXACT [] + synonym: "Bornholm disease" EXACT [] + synonym: "devil's grip" EXACT [] + synonym: "epidemic myalgia" EXACT [] synonym: "Epidemic pleurisy" EXACT [SNOMEDCT_2005_07_31:154356006] synonym: "Epidemic, myositis" EXACT [MTHICD9_2006:074.1] *************** *** 14895,14898 **** --- 14903,14907 ---- id: DOID:10883 name: herpangina + def: "A mouth disease and is_a coxsackievirus infectious disease that results_in infection located_in mouth, has_agent Human coxsackievirus A16, has_agent Human enterovirus 71, has_agent group B coxsackievirus, or has_agent echoviruses, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom fever, has_symptom sore throat, and has_symptom lesions in the back area of the mouth, particularly the soft palate or tonsillar pillars." [url:http\://emedicine.medscape.com/article/218502-overview, url:http\://en.wikipedia.org/wiki/Herpangina, url:http\://www.nlm.nih.gov/medlineplus/ency/article/000969.htm] synonym: "Vesicular pharyngitis" EXACT [MTHICD9_2006:074.0] xref: ICD9CM_2010:074.0 *************** *** 14905,14909 **** xref: UMLS_CUI:C0019338 is_a: DOID:10545 ! coxsackievirus infectious disease ! is_a: DOID:9637 ! stomatitis [Term] --- 14914,14918 ---- xref: UMLS_CUI:C0019338 is_a: DOID:10545 ! coxsackievirus infectious disease ! is_a: DOID:403 ! mouth disease [Term] *************** *** 15241,15246 **** id: DOID:10910 name: echovirus meningitis ! synonym: "Echovirus meningitis (disorder)" EXACT [SNOMEDCT_2005_07_31:192667007] ! synonym: "Meningitis due to ECHO virus" EXACT [ICD9CM_2006:047.1] xref: ICD9CM_2010:047.1 xref: SNOMEDCT_2010_1_31:186488005 --- 15250,15254 ---- id: DOID:10910 name: echovirus meningitis ! def: "An enterovirus meningitis and is_a echovirus infectious disease that results_in inflammation located_in meningeal cluster, has_agent echovirus, which is transmitted_by ingestion of food contaminated with feces, transmitted_by droplet spread of oronasal secretions from infected person, or transmitted_by contaminated fomites. The infection has_symptom fever, has_symptom chills, has_symptom nausea, has_symptom headache, has_symptom photophobia and has_symptom neck stiffness." [url:http\://www.ncbi.nlm.nih.gov/pmc/articles/PMC2563715/pdf/60.pdf] xref: ICD9CM_2010:047.1 xref: SNOMEDCT_2010_1_31:186488005 *************** *** 15253,15256 **** --- 15261,15265 ---- id: DOID:10911 name: echovirus infectious disease + def: "An Enterovirus infectious disease that results_in infection located_in gastrointestinal tract, or located_in skin, has_agent echoviruses, which are transmitted_by ingestion of food contaminated with feces, transmitted_by droplet spread of oronasal secretions from infected person, or transmitted_by contaminated fomites." [url:http\://en.wikipedia.org/wiki/Echovirus] synonym: "Enteric cytopathic human orphan virus infection" RELATED [] xref: MSH2010_2010_02_22:D004457 *************** *** 19391,19394 **** --- 19400,19404 ---- id: DOID:11227 name: acute hemorrhagic conjunctivitis + def: "An acute conjunctivitis and is_a Enterovirus infectious disease that results_in inflammation located in conjunctiva, has_agent Human coxsackievirus A24 or has_agent Human enterovirus 70, which are transmitted_by contaminated fomites or transmitted_by contact with contaminated hands. The infection has_symptom vascular dilation, has_symptom eyelid edema, has_symptom photophobia, has_symptom redness of the eyes, has_symptom watering of the eye, has_symptom conjunctival congestion, and has_symptom superficial punctate epithelial keratitis." [url:http\://www.cdc.gov/mmwr/preview/mmwrhtml/mm5328a2.htm, url:http\://www.cdc.gov/ncidod/eid/vol5no2/maitreyi.htm, url:http\://www.doh.state.fl.us/disease_ctrl/epi/htopics/reports/ahcpres.pdf] synonym: "Apollo disease" EXACT [MTHICD9_2006:077.4] synonym: "Epidemic hemorrhagic conjunctivitis" EXACT [ICD9CM_2006:077.4] *************** *** 35696,35700 **** alt_id: DOID:12547 def: "A viral hepatitis that involves inflammation of the liver caused by Hepatitis A virus, which does not result in chronic infection. The symptoms include fever, fatigue, loss of appetite, nausea, vomiting, abdominal pain, clay-colored bowel movements, joint pain and jaundice." [url:http\://www.cdc.gov/hepatitis/HAV/index.htm, url:http\://www.cdc.gov/hepatitis/Resources/Professionals/PDFs/ABCTable.pdf] - synonym: "Infectious hepatitis" EXACT [SNOMEDCT_2005_07_31:154347003] synonym: "Viral hepatitis A" RELATED [] synonym: "viral hepatitis A with hepatic coma" EXACT [] --- 35706,35709 ---- *************** *** 66285,66291 **** --- 66294,66302 ---- id: DOID:1804 name: coxsackie pericarditis + def: "A pericarditis and is_a coxsackie carditis that results_in inflammation located_in pericardium, has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom acute chest pain, has_symptom disturbance of heart rate, and has_symptom dyspnea." [url:http\://ccdm.unboundmedicine.com/ccdm/ub/view/Communicable-Diseases/460229/all/coxsackievirus_carditis_] xref: ICD9CM_2010:074.21 xref: SNOMEDCT_2010_1_31:27806003 xref: UMLS_CUI:C0153104 + is_a: DOID:1787 ! pericarditis is_a: DOID:1805 ! coxsackie carditis *************** *** 66293,66296 **** --- 66304,66308 ---- id: DOID:1805 name: coxsackie carditis + def: "A coxsackievirus infectious disease that results_in inflammation located_in heart, has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions." [url:http\://books.google.com/books?id=VbjFQiz8aR0C&pg=RA1-PA1614&lpg#v=, url:http\://ccdm.unboundmedicine.com/ccdm/ub/view/Communicable-Diseases/460229/all/coxsackievirus_carditis_] synonym: "Enterovirus heart infection (disorder)" EXACT [SNOMEDCT_2005_07_31:46397005] xref: ICD9CM_2010:074.2 *************** *** 66306,66309 **** --- 66318,66322 ---- id: DOID:1806 name: coxsackie endocarditis + def: "An infective endocarditis and is_a coxsackie carditis that results_in inflammation located_in endocardium, has_agent group B coxsackievirus, which are transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions." [url:http\://books.google.com/books?id=c-dKGQ0uSioC&pg=PA200&lpg#v=onepage&q&f=false] xref: ICD9CM_2010:074.22 xref: SNOMEDCT_2010_1_31:186662001 *************** *** 72779,72782 **** --- 72792,72796 ---- id: DOID:2324 name: coxsackie meningitis + def: "An enterovirus meningitis and is_a coxsackievirus infectious disease that results_in inflammation located_in meningeal cluster, has_agent coxsackievirus, which is transmitted_by ingestion of food contaminated with feces, transmitted_by contact with pharyngeal secretions, or transmitted_by droplet spread of oronasal secretions. The infection has_symptom fever, has_symptom chills, has_symptom nausea, has_symptom headache, and has_symptom neck pain." [url:http\://emedicine.medscape.com/article/215241-overview, url:http\://kidshealth.org/parent/infections/bacterial_viral/coxsackie.html#] synonym: "Coxsackie meningitis (disorder)" EXACT [SNOMEDCT_2005_07_31:111878007] synonym: "Coxsackie viral meningitis" EXACT [SNOMEDCT_2005_07_31:186487000] *************** *** 72786,72789 **** --- 72800,72804 ---- xref: SNOMEDCT_2010_1_31:186487000 xref: UMLS_CUI:C0276431 + is_a: DOID:10545 ! coxsackievirus infectious disease is_a: DOID:2325 ! enterovirus meningitis *************** *** 84614,84619 **** name: tropical spastic paraparesis synonym: "Tropical spastic paralysis" EXACT [SNOMEDCT_2005_07_31:45129002] - synonym: "tropical spastic paraparesis" EXACT [CSP2005:2057-3666] - synonym: "tropical spastic paraparesis" EXACT [CSP2005:3130-7431] synonym: "Tropical spastic paraplegia" EXACT [SNOMEDCT_2005_07_31:192733005] xref: MSH2010_2010_02_22:D015493 --- 84629,84632 ---- *************** *** 92139,92145 **** id: DOID:3800 name: avian leukosis - synonym: "avian leukosis" EXACT [CSP2005:2004-5157] - synonym: "Avian leukosis (disorder)" EXACT [SNOMEDCT_2005_07_31:407505002] - synonym: "Avian leukosis (disorder)" EXACT [SNOMEDCT_2005_07_31:58485008] synonym: "Tumor Virus Infections" RELATED [] xref: MSH2010_2010_02_22:D001353 --- 92152,92155 ---- *************** *** 104380,104383 **** --- 104390,104394 ---- id: DOID:4808 name: Enterovirus infectious disease + def: "A Picornaviridae infectious disease that results_in infection in animals and humans, has_agent Enterovirus, which is transmitted_by direct contact with secretions from an infected person, transmitted_by fomites, transmitted_by droplet spread of oronasal secretions from an infected person, or transmitted_by ingestion of contaminated food." [url:http\://www.idph.state.il.us/public/hb/hbentero.htm] xref: MSH2010_2010_02_22:D004769 xref: SNOMEDCT_2010_1_31:186752004 *************** *** 104390,104396 **** id: DOID:4809 name: enzootic porcine encephalomyelitis xref: MSH2010_2010_02_22:D004682 xref: UMLS_CUI:C0014073 ! is_a: DOID:4808 ! Enterovirus infectious disease is_a: DOID:640 ! encephalomyelitis --- 104401,104410 ---- id: DOID:4809 name: enzootic porcine encephalomyelitis + synonym: "Porcine polioencephalomyelitis" EXACT [] + synonym: "Talfan disease" EXACT [] + synonym: "Teschen disease" EXACT [] xref: MSH2010_2010_02_22:D004682 xref: UMLS_CUI:C0014073 ! is_a: DOID:3668 ! Picornaviridae infectious disease is_a: DOID:640 ! encephalomyelitis *************** *** 106658,106662 **** id: DOID:5002 name: equine infectious anemia - synonym: "Equine infectious anemia (disorder)" EXACT [SNOMEDCT_2005_07_31:40124009] synonym: "Fever, swamp" EXACT [MTHICD9_2006:100.89] xref: MSH2010_2010_02_22:D004859 --- 106672,106675 ---- *************** *** 109516,109528 **** name: HIV infectious disease synonym: "HIV infection" EXACT [CSP2005:1560-6305] - synonym: "HIV Infection" EXACT [NCI2004_11_17:C3108] - synonym: "HTLV-III/LAV infection -RETIRED-" EXACT [SNOMEDCT_2005_07_31:123321001] - synonym: "Human immunodeficiency virus [HIV] disease" EXACT [ICD9CM_2006:042] synonym: "HUMAN IMMUNOdeficiency VIRUS [HIV] INFECTION" EXACT [ICD9CM_2006:042-042.99] synonym: "Human immunodeficiency virus disease" EXACT [MTHICD9_2006:042] - synonym: "Human immunodeficiency virus disease (disorder)" EXACT [SNOMEDCT_2005_07_31:187438009] - synonym: "Human immunodeficiency virus infection" EXACT [SNOMEDCT_2005_07_31:186705005] - synonym: "Human immunodeficiency virus infection (disorder)" EXACT [SNOMEDCT_2005_07_31:86406008] - synonym: "Unspecified human immunodeficiency virus [HIV] disease (disorder)" EXACT [SNOMEDCT_2005_07_31:187453001] xref: ICD9CM_2010:042 xref: ICD9CM_2010:042-042.99 --- 109529,109534 ---- *************** *** 136045,136049 **** name: Enterovirus gastroenteritis alt_id: DOID:7854 ! def: "A viral gastroenteritis that involves inflammation of the stomach and intestines in animals and humans caused by drinking water contaminated with enteroviruses, which can result in diarrhea." [url:http\://www.ncbi.nlm.nih.gov/pubmed/17033423, url:http\://www.springerlink.com/content/p0255l7r3217771k/fulltext.pdf] xref: ICD9CM_2010:008.67 xref: UMLS_CUI:C0374937 --- 136051,136055 ---- name: Enterovirus gastroenteritis alt_id: DOID:7854 ! def: "A viral gastroenteritis and is_a Enterovirus infectious disease that results_in inflammation located_in stomach and located_in intestine, has_agent Enterovirus, which is transmitted_by contaminated drinking water. The infection has_symptom diarrhea." [url:http\://www.ncbi.nlm.nih.gov/pubmed/17033423, url:http\://www.springerlink.com/content/p0255l7r3217771k/fulltext.pdf] xref: ICD9CM_2010:008.67 xref: UMLS_CUI:C0374937 |