[Obo-phenotype-commits] obo/ontology/phenotype/phenotype_xp human_phenotype_xp.obo, 1.390, 1.391

[Georgios V. G. <gk...@us...>]

Update of /cvsroot/obo/obo/ontology/phenotype/phenotype_xp
In directory sfp-cvsdas-4.v30.ch3.sourceforge.com:/tmp/cvs-serv12928

Modified Files:
	human_phenotype_xp.obo 
Log Message:
update

Index: human_phenotype_xp.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/phenotype_xp/human_phenotype_xp.obo,v
retrieving revision 1.390
retrieving revision 1.391
diff -C2 -d -r1.390 -r1.391
*** human_phenotype_xp.obo	18 Sep 2010 11:11:21 -0000	1.390
--- human_phenotype_xp.obo	19 Oct 2010 12:00:24 -0000	1.391
***************
*** 3,10 ****
  saved-by: George Gkoutos
  id-mapping: during OBO_REL:exists_during
- id-mapping: towards OBO_REL:towards
  id-mapping: qualifier qualifier
  id-mapping: output has_output
- id-mapping: inheres_in OBO_REL:inheres_in
  id-mapping: has_quality OBO_REL:has_quality
  id-mapping: quality_of OBO_REL:quality_of
--- 3,8 ----
***************
*** 2955,2958 ****
--- 2953,2962 ----
  
  [Term]
+ id: HP:0002260 ! Craniofacial dysmorphism
+ intersection_of: PATO:0000051 ! morphology
+ intersection_of: inheres_in _:craniofacial_bone
+ intersection_of: qualifier PATO:0000460 ! abnormal
+ 
+ [Term]
  id: HP:0005255 ! Absence of pectoralis minor muscle
  intersection_of: PATO:0001557 ! lacks all physical parts of type
***************
*** 4205,4212 ****
  intersection_of: inheres_in FMA:52748 ! Mandible
  
! [Term]
! id: HP:0005775 ! Multiple skeletal anomalies
! intersection_of: PATO:0000470 ! present in greater numbers in organism
! intersection_of: inheres_in HP:0000924 ! Abnormality of the musculoskeletal system
  
  [Term]
--- 4209,4216 ----
  intersection_of: inheres_in FMA:52748 ! Mandible
  
! ![Term]
! !id: HP:0005775 ! Multiple skeletal anomalies
! !intersection_of: PATO:0000470 ! present in greater numbers in organism
! !intersection_of: inheres_in HP:0000924 ! Abnormality of the musculoskeletal system
  
  [Term]
***************
*** 13327,13335 ****
  intersection_of: inheres_in FMA:58301 ! Retina
  
! [Term]
! id: HP:0000551 ! Abnormal color vision
! intersection_of: PATO:0000014 ! color
! intersection_of: inheres_in GO:0007601 ! visual perception
! intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
--- 13331,13337 ----
  intersection_of: inheres_in FMA:58301 ! Retina
  
! ! request GO for color vision
! ![Term]
! !id: HP:0000551 ! Abnormal color vision
  
  [Term]
***************
*** 22133,22136 ****
--- 22135,22144 ----
  intersection_of: qualifier PATO:0000460 ! abnormal
  
+ [Term]
+ id: HP:0000708 ! Behavioural/Psychiatric Abnormality
+ intersection_of: PATO:0000001  ! quality
+ intersection_of: OBO_REL:inheres_in GO:0007610 ! behavior
+ intersection_of: qualifier PATO:0000460 ! abnormal
+ 
  ! not sure about this - similar case - Chris needs to add them to the spatial ontology
  
***************
*** 22252,22253 ****
--- 22260,22264 ----
  name: occurs_in
  
+ [Typedef]
+ id: inheres_in
+ name:inheres_in