From: <no...@us...> - 2010-07-20 20:35:00
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Revision: 3472 http://obo.svn.sourceforge.net/obo/?rev=3472&view=rev Author: nomi Date: 2010-07-20 20:34:49 +0000 (Tue, 20 Jul 2010) Log Message: ----------- Modified Paths: -------------- phenote/trunk/obo-files/gene_ontology_ext.obo phenote/trunk/obo-files/quality.obo Modified: phenote/trunk/obo-files/gene_ontology_ext.obo =================================================================== --- phenote/trunk/obo-files/gene_ontology_ext.obo 2010-07-20 19:28:25 UTC (rev 3471) +++ phenote/trunk/obo-files/gene_ontology_ext.obo 2010-07-20 20:34:49 UTC (rev 3472) @@ -1,5 +1,5 @@ format-version: 1.2 -date: 15:07:2010 15:08 +date: 19:07:2010 16:58 saved-by: tanyaberardini auto-generated-by: OBO-Edit 2.0 subsetdef: goslim_candida "Candida GO slim" @@ -13,7 +13,7 @@ subsetdef: unvetted "unvetted" synonymtypedef: systematic_synonym "Systematic synonym" EXACT default-namespace: gene_ontology -remark: cvs version: $Revision: 1.1336 $ +remark: cvs version: $Revision: 1.1341 $ [Term] id: GO:0000001 @@ -12782,11 +12782,12 @@ [Term] id: GO:0001989 -name: positive regulation of the force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure +name: positive regulation of the force of heart contraction involved in baroreceptor response to decreased systemic arterial blood pressure namespace: biological_process -def: "Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as a result of the baroreceptor response to decreased blood pressure." [ISBN:0721643949 "Textbook of Medical Physiology"] -synonym: "increased force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure" EXACT [] +def: "Any process that increases the force with which the cardiac muscles of the heart pump blood through the circulatory system as part of the baroreceptor response to decreased blood pressure." [ISBN:0721643949 "Textbook of Medical Physiology"] +synonym: "increased force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure" RELATED [] synonym: "increased strength of cardiac contraction during baroreceptor response to decreased blood pressure" RELATED [] +synonym: "positive regulation of the force of heart contraction during baroreceptor response to decreased systemic arterial blood pressure" RELATED [GOC:tb] is_a: GO:0045823 ! positive regulation of heart contraction relationship: part_of GO:0001982 ! baroreceptor response to decreased systemic arterial blood pressure @@ -17564,19 +17565,21 @@ [Term] id: GO:0002530 -name: regulation of systemic arterial blood pressure during acute phase response +name: regulation of systemic arterial blood pressure involved in acute-phase response namespace: biological_process -def: "Any process that modulates the force with which blood travels through the circulatory system during the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein." [GOC:jal, ISBN:081533642X] -synonym: "blood pressure regulation during acute phase response" EXACT [] +def: "Any process that modulates the force with which blood travels through the circulatory system that contributes to the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein." [GOC:jal, ISBN:081533642X] +synonym: "blood pressure regulation during acute phase response" RELATED [] +synonym: "regulation of systemic arterial blood pressure during acute phase response" RELATED [GOC:tb] is_a: GO:0003073 ! regulation of systemic arterial blood pressure relationship: part_of GO:0006953 ! acute-phase response [Term] id: GO:0002531 -name: regulation of heart contraction during acute phase response +name: regulation of heart contraction involved in acute-phase response namespace: biological_process -def: "Any process that modulates the frequency, rate or extent of heart contraction during the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein." [GOC:jal, PMID:15642986, PMID:15834430] -synonym: "regulation of cardiac contraction during acute phase response" EXACT [] +def: "Any process that modulates the frequency, rate or extent of heart contraction that contributes to the acute phase response. The acute phase response occurs during the early phases of an infection and is marked by changes in the production of plasma proteins such as C-reactive protein." [GOC:jal, PMID:15642986, PMID:15834430] +synonym: "regulation of cardiac contraction during acute phase response" RELATED [] +synonym: "regulation of heart contraction during acute phase response" RELATED [GOC:tb] is_a: GO:0008016 ! regulation of heart contraction relationship: part_of GO:0006953 ! acute-phase response @@ -27101,6 +27104,7 @@ namespace: biological_process def: "The cellular process that results in the specification, formation or maintenance of anisotropic intracellular organization that results in the directional division of a growth plate cartilage chondrocyte." [GOC:ascb_2009, GOC:dph, GOC:tb] synonym: "growth plate cartilage chondrocyte polarization" RELATED [GOC:ascb_2009, GOC:dph, GOC:tb] +is_a: GO:0001736 ! establishment of planar polarity is_a: GO:0030010 ! establishment of cell polarity relationship: part_of GO:0003423 ! growth plate cartilage chondrocyte division created_by: dph @@ -27122,7 +27126,6 @@ namespace: biological_process def: "A process that is carried out at the cellular level which results in the polarization of cytoskeletal structures in a growth plate cartilage chondrocyte. This process results in the oriented division of the cell." [GOC:ascb_2009, GOC:dph, GOC:tb] is_a: GO:0007010 ! cytoskeleton organization -is_a: GO:0007163 ! establishment or maintenance of cell polarity relationship: part_of GO:0003424 ! establishment of cell polarity involved in growth plate cartilage chondrocyte division created_by: dph creation_date: 2009-12-22T11:38:22Z @@ -33776,7 +33779,7 @@ xref: MetaCyc:3.2.1.33-RXN xref: Reactome:8347 "amylo-alpha-1,6-glucosidase activity" is_a: GO:0004133 ! glycogen debranching enzyme activity -is_a: GO:0015926 ! glucosidase activity +is_a: GO:0004558 ! alpha-glucosidase activity [Term] id: GO:0004136 @@ -36198,6 +36201,7 @@ name: farnesyl-diphosphate farnesyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: 2 farnesyl diphosphate = diphosphate + presqualene diphosphate." [EC:2.5.1.21] +comment: Note that the two reactions performed by EC:2.5.1.21 are represented in GO by 'farnesyl-diphosphate farnesyltransferase activity ; GO:0004310' and 'squalene synthase activity ; GO:0051996'. subset: gosubset_prok synonym: "farnesyl-diphosphate:farnesyl-diphosphate farnesyltransferase activity" EXACT [EC:2.5.1.21] synonym: "farnesyltransferase activity" BROAD [EC:2.5.1.21] @@ -40266,17 +40270,16 @@ id: GO:0004575 name: sucrose alpha-glucosidase activity namespace: molecular_function -def: "Catalysis of the hydrolysis of sucrose and maltose by an alpha-D-glucosidase-type action." [EC:3.2.1.48] -synonym: "intestinal sucrase activity" EXACT [EC:3.2.1.48] +def: "Catalysis of the reaction: sucrose + H2O = alpha-D-glucose + D-fructose." [EC:3.2.1.48] +synonym: "intestinal sucrase activity" NARROW [EC:3.2.1.48] synonym: "sucrase activity" EXACT [EC:3.2.1.48] synonym: "sucrase(invertase)" RELATED [EC:3.2.1.48] synonym: "sucrase-isomaltase activity" RELATED [EC:3.2.1.48] synonym: "sucrose alpha-D-glucohydrolase activity" EXACT [] synonym: "sucrose alpha-glucohydrolase activity" EXACT [EC:3.2.1.48] synonym: "sucrose-alpha-D-glucohydrolase activity" EXACT [EC:3.2.1.48] -synonym: "sucrose.alpha.-glucohydrolase activity" EXACT [EC:3.2.1.48] xref: EC:3.2.1.48 -xref: MetaCyc:3.2.1.48-RXN +xref: MetaCyc:RXN-1461 xref: Reactome:12493 "sucrose alpha-glucosidase activity" is_a: GO:0004558 ! alpha-glucosidase activity @@ -54463,7 +54466,6 @@ def: "The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose." [ISBN:0198506732 "Oxford Dictionary of Biochemistry and Molecular Biology"] subset: gosubset_prok synonym: "galactose metabolism" EXACT [] -xref: MetaCyc:GALACTMETAB-PWY xref: Wikipedia:Galactose is_a: GO:0019318 ! hexose metabolic process @@ -84796,6 +84798,7 @@ name: phospho-N-acetylmuramoyl-pentapeptide-transferase activity namespace: molecular_function def: "Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine + undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-L-lysyl-D-alanyl-D-alanine-diphosphoundecaprenol." [EC:2.7.8.13] +comment: Note that EC classifies 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity ; GO:0051992' and 'phospho-N-acetylmuramoyl-pentapeptide-transferase activity ; GO:0008963' under the same EC number, EC:2.7.8.13. subset: gosubset_prok synonym: "MraY transferase activity" NARROW [EC:2.7.8.13] synonym: "phospho-MurNAc-pentapeptide transferase activity" EXACT [EC:2.7.8.13] @@ -84810,9 +84813,7 @@ synonym: "UDP-MurNAc-L-Ala-D-gamma-Glu-L-Lys-D-Ala-D-Ala:C55-isoprenoid alcohol transferase activity" EXACT [EC:2.7.8.13] synonym: "UDP-MurNAc-pentapeptide phosphotransferase activity" EXACT [EC:2.7.8.13] xref: EC:2.7.8.13 -xref: MetaCyc:PHOSNACMURPENTATRANS-RXN xref: MetaCyc:RXN-8975 -xref: MetaCyc:RXN-9671 is_a: GO:0016780 ! phosphotransferase activity, for other substituted phosphate groups [Term] @@ -86751,7 +86752,6 @@ synonym: "vitamin H biosynthesis" EXACT [] synonym: "vitamin H biosynthetic process" EXACT [] xref: MetaCyc:BIOTIN-SYNTHESIS-PWY -xref: MetaCyc:PWY-3701 is_a: GO:0006768 ! biotin metabolic process is_a: GO:0018130 ! heterocycle biosynthetic process is_a: GO:0042364 ! water-soluble vitamin biosynthetic process @@ -119709,7 +119709,7 @@ namespace: molecular_function def: "Catalysis of the reaction: selenocysteine + S-adenosyl-L-methionine = Se-methylselenocysteine + S-adenosyl-homocysteine." [EC:2.1.1.-, PMID:10026151] xref: EC:2.1.1.- -is_a: GO:0008168 ! methyltransferase activity +is_a: GO:0051995 ! Se-methyltransferase activity [Term] id: GO:0016206 @@ -126715,7 +126715,7 @@ synonym: "protein 6-N-(octanoyl)lysine:sulfur sulfurtransferase activity" EXACT [EC:2.8.1.8] synonym: "protein N6-(octanoyl)lysine:sulfur sulfurtransferase activity" EXACT [EC:2.8.1.8] xref: EC:2.8.1.8 -xref: MetaCyc:2.8.1.8-RXN +xref: MetaCyc:RXN0-949 is_a: GO:0016783 ! sulfurtransferase activity is_a: GO:0016979 ! lipoate-protein ligase activity is_a: GO:0070283 ! radical SAM enzyme activity @@ -133083,7 +133083,6 @@ synonym: "quinoprotein alcohol dehydrogenase activity" EXACT [EC:1.1.99.8] synonym: "quinoprotein ethanol dehydrogenase activity" EXACT [EC:1.1.99.8] xref: EC:1.1.99.8 -xref: MetaCyc:ALCOHOL-DEHYDROGENASE-ACCEPTOR-RXN xref: UM-BBD_enzymeID:e0004 is_a: GO:0016614 ! oxidoreductase activity, acting on CH-OH group of donors @@ -163747,7 +163746,7 @@ name: 8-hydroxyfuranocoumarin 8-O-methyltransferase activity namespace: molecular_function alt_id: GO:0030765 -def: "Catalysis of the reaction: S-adenosyl-L-methionine + 8-hydroxyfuranocoumarin = S-adenosyl-L-homocysteine + 8-methoxyfuranocoumarin." [EC:2.1.1.70] +def: "Catalysis of the reaction: S-adenosyl-L-methionine + an 8-hydroxyfuranocoumarin = S-adenosyl-L-homocysteine + an 8-methoxyfuranocoumarin." [EC:2.1.1.70] synonym: "furanocoumarin 8-methyltransferase activity" EXACT [EC:2.1.1.70] synonym: "furanocoumarin 8-O-methyl-transferase activity" EXACT [EC:2.1.1.70] synonym: "S-adenosyl-L-methionine:8-hydroxyfuranocoumarin 8-O-methyltransferase activity" EXACT [EC:2.1.1.70] @@ -163758,7 +163757,6 @@ synonym: "xanthotoxol O-methyltransferase activity" EXACT [] synonym: "XMT activity" RELATED [EC:2.1.1.70] xref: EC:2.1.1.70 -xref: MetaCyc:2.1.1.70-RXN is_a: GO:0008757 ! S-adenosylmethionine-dependent methyltransferase activity [Term] @@ -168770,7 +168768,7 @@ synonym: "exocellulase activity" EXACT [] xref: EC:3.2.1.74 xref: MetaCyc:3.2.1.74-RXN -is_a: GO:0015926 ! glucosidase activity +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0031218 @@ -168783,7 +168781,7 @@ synonym: "galactanase activity" EXACT [] xref: EC:3.2.1.89 xref: MetaCyc:3.2.1.89-RXN -is_a: GO:0016798 ! hydrolase activity, acting on glycosyl bonds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0031219 @@ -168794,7 +168792,7 @@ synonym: "levan hydrolase activity" EXACT [] xref: EC:3.2.1.65 xref: MetaCyc:3.2.1.65-RXN -is_a: GO:0016798 ! hydrolase activity, acting on glycosyl bonds +is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds [Term] id: GO:0031220 @@ -181447,10 +181445,12 @@ [Term] id: GO:0032450 -name: maltase activity +name: maltose alpha-glucosidase activity namespace: molecular_function -def: "Catalysis of the hydrolysis of maltose by an alpha-D-glucosidase-type action." [GOC:pd] -xref: MetaCyc:MALTODEXGLUCOSID-RXN +def: "Catalysis of the reaction: alpha-maltose + H2O = 2 alpha-D-glucose." [MetaCyc:RXN-2141] +synonym: "maltase activity" EXACT [] +xref: EC:3.2.1.20 +xref: MetaCyc:RXN-2141 is_a: GO:0004558 ! alpha-glucosidase activity [Term] @@ -196858,7 +196858,6 @@ synonym: "VIP1" NARROW [EC:2.7.4.24] synonym: "VIP2" NARROW [EC:2.7.4.24] xref: EC:2.7.4.24 -xref: MetaCyc:2.7.1.155-RXN xref: MetaCyc:2.7.4.24-RXN is_a: GO:0016776 ! phosphotransferase activity, phosphate group as acceptor @@ -197579,7 +197578,7 @@ synonym: "endo-1,2-beta-glucanase activity" EXACT [EC:3.2.1.71] xref: EC:3.2.1.71 xref: MetaCyc:3.2.1.71-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0033914 @@ -197604,7 +197603,7 @@ synonym: "exo-1,2-1,3-alpha-mannosidase activity" EXACT [EC:3.2.1.77] xref: EC:3.2.1.77 xref: MetaCyc:3.2.1.77-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015923 ! mannosidase activity [Term] id: GO:0033916 @@ -197651,7 +197650,7 @@ synonym: "glucosidase II activity" EXACT [EC:3.2.1.84] xref: EC:3.2.1.84 xref: MetaCyc:3.2.1.84-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0004558 ! alpha-glucosidase activity [Term] id: GO:0033920 @@ -197665,7 +197664,7 @@ synonym: "phospho-beta-galactosidase activity" EXACT [EC:3.2.1.85] xref: EC:3.2.1.85 xref: MetaCyc:6-PHOSPHO-BETA-GALACTOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0033921 @@ -197677,7 +197676,7 @@ synonym: "polysaccharide depolymerase activity" EXACT [EC:3.2.1.87] xref: EC:3.2.1.87 xref: MetaCyc:3.2.1.87-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0033922 @@ -197790,7 +197789,7 @@ synonym: "endo-beta-galactosidase activity" BROAD [EC:3.2.1.102] xref: EC:3.2.1.102 xref: MetaCyc:3.2.1.102-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0033930 @@ -197803,7 +197802,7 @@ synonym: "keratanase activity" EXACT [EC:3.2.1.103] xref: EC:3.2.1.103 xref: MetaCyc:3.2.1.103-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0033931 @@ -197836,7 +197835,7 @@ synonym: "dextran alpha-1,2 debranching enzyme" RELATED [EC:3.2.1.115] xref: EC:3.2.1.115 xref: MetaCyc:3.2.1.115-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0004558 ! alpha-glucosidase activity [Term] id: GO:0033934 @@ -197860,7 +197859,7 @@ synonym: "oligoxyloglucan xyloglucohydrolase activity" EXACT [EC:3.2.1.120] xref: EC:3.2.1.120 xref: MetaCyc:3.2.1.120-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0033936 @@ -197934,7 +197933,7 @@ synonym: "exo-1,2-1,6-alpha-mannosidase activity" EXACT [EC:3.2.1.137] xref: EC:3.2.1.137 xref: MetaCyc:3.2.1.137-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015923 ! mannosidase activity [Term] id: GO:0033942 @@ -197956,7 +197955,7 @@ synonym: "galactan (1->3)-beta-D-galactosidase activity" EXACT [EC:3.2.1.145] xref: EC:3.2.1.145 xref: MetaCyc:3.2.1.145-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015925 ! galactosidase activity [Term] id: GO:0033944 @@ -198006,7 +198005,7 @@ synonym: "endo-beta-mannosidase activity" EXACT [EC:3.2.1.152] xref: EC:3.2.1.152 xref: MetaCyc:3.2.1.152-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015923 ! mannosidase activity [Term] id: GO:0033948 @@ -198116,7 +198115,7 @@ xref: EC:3.2.1.161 xref: MetaCyc:3.2.1.161-RXN xref: MetaCyc:RXN-9156 -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0033957 @@ -214907,7 +214906,7 @@ subset: gosubset_prok synonym: "transport of peptides or proteins into host" EXACT [] is_a: GO:0044417 ! translocation of molecules into host -is_a: GO:0051808 ! translocation of peptides or proteins into other organism during symbiotic interaction +is_a: GO:0051808 ! translocation of peptides or proteins into other organism involved in symbiotic interaction [Term] id: GO:0042001 @@ -225463,7 +225462,7 @@ synonym: "oligo-1,3-glucosidase activity" RELATED [EC:3.2.1.39] xref: EC:3.2.1.39 xref: MetaCyc:3.2.1.39-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0042974 @@ -235222,12 +235221,12 @@ [Term] id: GO:0043889 -name: (S)-3-O-geranylgeranylglyceryl phosphate activity +name: (S)-3-O-geranylgeranylglyceryl phosphate synthase activity namespace: molecular_function def: "Catalysis of the alkylation of the primary hydroxyl group in (S)-glyceryl phosphate by geranylgeranyl diphosphate to form (S)-3-O-geranylgeranylglyceryl phosphate." [PMID:12801917, PMID:17253090, PMID:8408023] comment: This function is involved in archaeal lipid synthesis. subset: gosubset_prok -synonym: "(S)-3-O-geranylgeranylglycerylphosphate activity" EXACT [] +synonym: "(S)-3-O-geranylgeranylglycerylphosphate synthase activity" EXACT [] synonym: "(S)-GGGP synthase activity" EXACT [] synonym: "GGGP synthase activity" EXACT [] synonym: "GGGPS" EXACT [] @@ -235336,7 +235335,7 @@ id: GO:0043896 name: glucan 1,6-alpha-glucosidase activity namespace: molecular_function -def: "Catalysis of the hydrolysis of (1->6)-alpha-D-glucosidic linkages in (1->6)-alpha-D-glucans and derived oligosaccharides." [EC:3.2.1.70] +def: "Catalysis of the hydrolysis of 1,6-alpha-D-glucosidic linkages in 1,6-alpha-D-glucans and derived oligosaccharides." [EC:3.2.1.70] subset: gosubset_prok synonym: "exo-1,6-alpha-glucosidase activity" EXACT [EC:3.2.1.70] synonym: "exo-1,6-beta-glucosidase" RELATED [] @@ -235346,7 +235345,7 @@ synonym: "glucodextrinase" BROAD [] xref: EC:3.2.1.70 xref: MetaCyc:3.2.1.70-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0004558 ! alpha-glucosidase activity [Term] id: GO:0043897 @@ -235881,17 +235880,18 @@ [Term] id: GO:0043946 -name: positive regulation of catalytic activity in other organism during symbiotic interaction +name: positive regulation of catalytic activity in other organism involved in symbiotic interaction namespace: biological_process def: "Any process by which an organism stops, prevents or reduces the frequency, rate or extent of enzyme activity in a second organism, where the two organisms are in a symbiotic interaction." [GOC:mtg_pamgo_17jul06, GOC:tb] subset: gosubset_prok synonym: "activation of enzyme activity in other organism" NARROW [] synonym: "activation of enzyme activity in other organism during symbiotic interaction" NARROW [] -synonym: "up regulation of enzyme activity in other organism during symbiotic interaction" EXACT [] -synonym: "up-regulation of enzyme activity in other organism during symbiotic interaction" EXACT [] -synonym: "upregulation of enzyme activity in other organism during symbiotic interaction" EXACT [] +synonym: "positive regulation of catalytic activity in other organism during symbiotic interaction" RELATED [GOC:dph] +synonym: "up regulation of enzyme activity in other organism during symbiotic interaction" RELATED [] +synonym: "up-regulation of enzyme activity in other organism during symbiotic interaction" RELATED [] +synonym: "upregulation of enzyme activity in other organism during symbiotic interaction" RELATED [] is_a: GO:0043085 ! positive regulation of catalytic activity -is_a: GO:0052203 ! modulation of catalytic activity in other organism during symbiotic interaction +is_a: GO:0052203 ! modulation of catalytic activity in other organism involved in symbiotic interaction [Term] id: GO:0043947 @@ -235904,7 +235904,7 @@ synonym: "up regulation by host of symbiont enzyme activity" EXACT [] synonym: "up-regulation by host of symbiont enzyme activity" EXACT [] synonym: "upregulation by host of symbiont enzyme activity" EXACT [] -is_a: GO:0043946 ! positive regulation of catalytic activity in other organism during symbiotic interaction +is_a: GO:0043946 ! positive regulation of catalytic activity in other organism involved in symbiotic interaction is_a: GO:0052405 ! negative regulation by host of symbiont molecular function is_a: GO:0052422 ! modulation by host of symbiont catalytic activity @@ -235920,7 +235920,7 @@ synonym: "up regulation by symbiont of host enzyme activity" EXACT [] synonym: "up-regulation by symbiont of host enzyme activity" EXACT [] synonym: "upregulation by symbiont of host enzyme activity" EXACT [] -is_a: GO:0043946 ! positive regulation of catalytic activity in other organism during symbiotic interaction +is_a: GO:0043946 ! positive regulation of catalytic activity in other organism involved in symbiotic interaction is_a: GO:0052056 ! negative regulation by symbiont of host molecular function is_a: GO:0052148 ! modulation by symbiont of host catalytic activity @@ -236855,21 +236855,21 @@ namespace: biological_process def: "An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type I secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction." [MITRE:tk] subset: gosubset_prok -is_a: GO:0052048 ! interaction with host via secreted substance during symbiotic interaction +is_a: GO:0052048 ! interaction with host via secreted substance involved in symbiotic interaction [Term] id: GO:0044048 name: interaction with host via protein secreted by type V secretion system namespace: biological_process def: "An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type V secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction." [MITRE:tk] -is_a: GO:0052048 ! interaction with host via secreted substance during symbiotic interaction +is_a: GO:0052048 ! interaction with host via secreted substance involved in symbiotic interaction [Term] id: GO:0044049 name: interaction with host via protein secreted by type VI secretion system namespace: biological_process def: "An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism via a type VI secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction." [MITRE:tk] -is_a: GO:0052048 ! interaction with host via secreted substance during symbiotic interaction +is_a: GO:0052048 ! interaction with host via secreted substance involved in symbiotic interaction [Term] id: GO:0044050 @@ -239126,13 +239126,14 @@ [Term] id: GO:0044250 -name: negative regulation of metabolic activity during hibernation +name: negative regulation of metabolic activity involved in hibernation namespace: biological_process -def: "The slowing of metabolic processes to very low levels in order to conserve energy during hibernation." [GOC:jl, Wikipedia:Hibernation] -synonym: "down regulation of metabolic activity during hibernation" EXACT [] -synonym: "down-regulation of metabolic activity during hibernation" EXACT [] -synonym: "downregulation of metabolic activity during hibernation" EXACT [] +def: "The slowing of metabolic processes to very low levels in order to conserve energy as a part of hibernation." [GOC:jl, Wikipedia:Hibernation] +synonym: "down regulation of metabolic activity during hibernation" RELATED [] +synonym: "down-regulation of metabolic activity during hibernation" RELATED [] +synonym: "downregulation of metabolic activity during hibernation" RELATED [] synonym: "inhibition of metabolic activity during hibernation" NARROW [] +synonym: "negative regulation of metabolic activity during hibernation" RELATED [GOC:tb] is_a: GO:0044252 ! negative regulation of multicellular organismal metabolic process relationship: part_of GO:0042750 ! hibernation @@ -240138,7 +240139,7 @@ def: "The directed movement of DNA from an organism to a location inside its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:cc] synonym: "transport of DNA into host" EXACT [] is_a: GO:0044417 ! translocation of molecules into host -is_a: GO:0051837 ! translocation of DNA into other organism during symbiotic interaction +is_a: GO:0051837 ! translocation of DNA into other organism involved in symbiotic interaction [Term] id: GO:0044419 @@ -261093,7 +261094,7 @@ synonym: "endo-beta-1,6-glucanase activity" EXACT [EC:3.2.1.75] xref: EC:3.2.1.75 xref: MetaCyc:3.2.1.75-RXN -is_a: GO:0015926 ! glucosidase activity +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0046558 @@ -263210,63 +263211,69 @@ [Term] id: GO:0046746 -name: virus budding from nuclear membrane during viral capsid re-envelopment +name: virus budding from nuclear membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host nuclear membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] -synonym: "nuclear membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "viral budding from nuclear membrane during viral capsid re-envelopment" EXACT [] +synonym: "nuclear membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "viral budding from nuclear membrane during viral capsid re-envelopment" RELATED [] +synonym: "virus budding from nuclear membrane during viral capsid re-envelopment" RELATED [GOC:tb] is_a: GO:0046745 ! viral capsid re-envelopment is_a: GO:0046765 ! virus budding from nuclear membrane [Term] id: GO:0046747 -name: virus budding from Golgi membrane during viral capsid re-envelopment +name: virus budding from Golgi membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host Golgi membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] -synonym: "Golgi membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "viral budding from Golgi membrane during viral capsid re-envelopment" EXACT [] +synonym: "Golgi membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "viral budding from Golgi membrane during viral capsid re-envelopment" RELATED [] +synonym: "virus budding from Golgi membrane during viral capsid re-envelopment" RELATED [GOC:tb] is_a: GO:0046745 ! viral capsid re-envelopment is_a: GO:0046763 ! virus budding from Golgi membrane [Term] id: GO:0046748 -name: virus budding from ER membrane during viral capsid re-envelopment +name: virus budding from ER membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host endoplasmic reticulum membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] -synonym: "endoplasmic reticulum membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "ER membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "viral budding from ER membrane during viral capsid re-envelopment" EXACT [] +synonym: "endoplasmic reticulum membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "ER membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "viral budding from ER membrane during viral capsid re-envelopment" RELATED [] +synonym: "virus budding from ER membrane during viral capsid re-envelopment" RELATED [GOC:tb] is_a: GO:0046745 ! viral capsid re-envelopment is_a: GO:0046764 ! virus budding from ER membrane [Term] id: GO:0046749 -name: virus budding from nuclear membrane during viral capsid envelopment +name: virus budding from nuclear membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host nuclear membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "nuclear membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from nuclear membrane during viral capsid envelopment" EXACT [] +synonym: "nuclear membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from nuclear membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from nuclear membrane during viral capsid envelopment" RELATED [GOC:tb] is_a: GO:0046744 ! viral capsid envelopment is_a: GO:0046765 ! virus budding from nuclear membrane [Term] id: GO:0046750 -name: virus budding from Golgi membrane during viral capsid envelopment +name: virus budding from Golgi membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host Golgi membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "Golgi membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from Golgi membrane during viral capsid envelopment" EXACT [] +synonym: "Golgi membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from Golgi membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from Golgi membrane during viral capsid envelopment" RELATED [GOC:tb] is_a: GO:0046744 ! viral capsid envelopment is_a: GO:0046763 ! virus budding from Golgi membrane [Term] id: GO:0046751 -name: virus budding from ER membrane during viral capsid envelopment +name: virus budding from ER membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host endoplasmic reticulum membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "endoplasmic reticulum membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "ER membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from ER membrane during viral capsid envelopment" EXACT [] +synonym: "endoplasmic reticulum membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "ER membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from ER membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from ER membrane during viral capsid envelopment" RELATED [GOC:tb] is_a: GO:0046744 ! viral capsid envelopment is_a: GO:0046764 ! virus budding from ER membrane @@ -263414,59 +263421,65 @@ [Term] id: GO:0046767 -name: virus budding from plasma membrane during viral capsid envelopment +name: virus budding from plasma membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host plasma membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "plasma membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from plasma membrane during viral capsid envelopment" EXACT [] +synonym: "plasma membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from plasma membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from plasma membrane during viral capsid envelopment" RELATED [GOC:tb] is_a: GO:0046744 ! viral capsid envelopment is_a: GO:0046766 ! virus budding from plasma membrane [Term] id: GO:0046768 -name: virus budding from plasma membrane during viral capsid re-envelopment +name: virus budding from plasma membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host plasma membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] -synonym: "plasma membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "viral budding from plasma membrane during viral capsid re-envelopment" EXACT [] +synonym: "plasma membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "viral budding from plasma membrane during viral capsid re-envelopment" RELATED [] +synonym: "virus budding from plasma membrane during viral capsid re-envelopment" RELATED [GOC:tb] is_a: GO:0046745 ! viral capsid re-envelopment is_a: GO:0046766 ! virus budding from plasma membrane [Term] id: GO:0046769 -name: virus budding from inner nuclear membrane during viral capsid re-envelopment +name: virus budding from inner nuclear membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host inner nuclear membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] -synonym: "inner nuclear membrane viral budding during viral capsid re-envelopment" EXACT [] -synonym: "viral budding from inner nuclear membrane during viral capsid re-envelopment" EXACT [] -is_a: GO:0046746 ! virus budding from nuclear membrane during viral capsid re-envelopment +synonym: "inner nuclear membrane viral budding during viral capsid re-envelopment" RELATED [] +synonym: "viral budding from inner nuclear membrane during viral capsid re-envelopment" RELATED [] +synonym: "virus budding from inner nuclear membrane during viral capsid re-envelopment" RELATED [GOC:tb] +is_a: GO:0046746 ! virus budding from nuclear membrane by viral capsid re-envelopment [Term] id: GO:0046770 -name: virus budding from outer nuclear membrane during viral capsid re-envelopment +name: virus budding from outer nuclear membrane by viral capsid re-envelopment namespace: biological_process def: "The re-envelopment of a virus, in which the nucleocapsid evaginates from the host outer nuclear membrane system, thus acquiring an additional membrane envelope." [ISBN:0072370319] synonym: "outer nuclear membrane viral budding during viral capsid re-envelopment" EXACT [] synonym: "viral budding from outer nuclear membrane during viral capsid re-envelopment" EXACT [] -is_a: GO:0046746 ! virus budding from nuclear membrane during viral capsid re-envelopment +synonym: "virus budding from outer nuclear membrane during viral capsid re-envelopment" RELATED [GOC:tb] +is_a: GO:0046746 ! virus budding from nuclear membrane by viral capsid re-envelopment [Term] id: GO:0046771 -name: virus budding from inner nuclear membrane during viral capsid envelopment +name: virus budding from inner nuclear membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host inner nuclear membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "inner nuclear membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from inner nuclear membrane during viral capsid envelopment" EXACT [] -is_a: GO:0046749 ! virus budding from nuclear membrane during viral capsid envelopment +synonym: "inner nuclear membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from inner nuclear membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from inner nuclear membrane during viral capsid envelopment" RELATED [GOC:tb] +is_a: GO:0046749 ! virus budding from nuclear membrane by viral capsid envelopment [Term] id: GO:0046772 -name: virus budding from outer nuclear membrane during viral capsid envelopment +name: virus budding from outer nuclear membrane by viral capsid envelopment namespace: biological_process def: "The envelopment of a virus, in which the nucleocapsid evaginates from the host outer nuclear membrane system, thus acquiring a membrane envelope." [ISBN:0072370319] -synonym: "outer nuclear membrane viral budding during viral capsid envelopment" EXACT [] -synonym: "viral budding from outer nuclear membrane during viral capsid envelopment" EXACT [] -is_a: GO:0046749 ! virus budding from nuclear membrane during viral capsid envelopment +synonym: "outer nuclear membrane viral budding during viral capsid envelopment" RELATED [] +synonym: "viral budding from outer nuclear membrane during viral capsid envelopment" RELATED [] +synonym: "virus budding from outer nuclear membrane during viral capsid envelopment" RELATED [GOC:tb] +is_a: GO:0046749 ! virus budding from nuclear membrane by viral capsid envelopment [Term] id: GO:0046773 @@ -265816,7 +265829,7 @@ synonym: "N-hydroxy-2-aminofluorene-O-acetyltransferase activity" EXACT [EC:2.3.1.118] xref: EC:2.3.1.118 xref: MetaCyc:2.3.1.118-RXN -is_a: GO:0008080 ! N-acetyltransferase activity +is_a: GO:0016413 ! O-acetyltransferase activity [Term] id: GO:0046992 @@ -271302,7 +271315,7 @@ synonym: "protein-alpha-D-glucosyl-1,2-beta-D-galactosyl-L-hydroxylysine glucohydrolase activity" EXACT [EC:3.2.1.107] xref: EC:3.2.1.107 xref: MetaCyc:3.2.1.107-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015926 ! glucosidase activity [Term] id: GO:0047403 @@ -273057,7 +273070,7 @@ synonym: "2-deoxy-alpha-glucosidase activity" EXACT [EC:3.2.1.112] xref: EC:3.2.1.112 xref: MetaCyc:2-DEOXYGLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015926 ! glucosidase activity [Term] id: GO:0047540 @@ -274747,7 +274760,7 @@ synonym: "amygdalinase" BROAD [EC:3.2.1.117] xref: EC:3.2.1.117 xref: MetaCyc:AMYGDALIN-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0047669 @@ -276193,7 +276206,7 @@ synonym: "coniferin-hydrolyzing beta-glucosidase activity" EXACT [EC:3.2.1.126] xref: EC:3.2.1.126 xref: MetaCyc:CONIFERIN-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0047783 @@ -277951,7 +277964,7 @@ synonym: "guanosine diphosphoglucosidase activity" EXACT [EC:3.2.1.42] xref: EC:3.2.1.42 xref: MetaCyc:GDP-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0015926 ! glucosidase activity [Term] id: GO:0047918 @@ -290679,7 +290692,7 @@ synonym: "prunasin hydrolase activity" EXACT [EC:3.2.1.118] xref: EC:3.2.1.118 xref: MetaCyc:PRUNASIN-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0050225 @@ -290963,7 +290976,7 @@ synonym: "raucaffricine glucosidase activity" EXACT [EC:3.2.1.125] xref: EC:3.2.1.125 xref: MetaCyc:RAUCAFFRICINE-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0050248 @@ -291580,7 +291593,7 @@ synonym: "steryl-b-glucosidase activity" EXACT [] xref: EC:3.2.1.104 xref: MetaCyc:STERYL-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0050296 @@ -292841,7 +292854,7 @@ synonym: "vicianin hydrolase activity" EXACT [EC:3.2.1.119] xref: EC:3.2.1.119 xref: MetaCyc:VICIANIN-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0050393 @@ -293254,7 +293267,7 @@ synonym: "strictosidine beta-D-glucohydrolase activity" EXACT [EC:3.2.1.105] xref: EC:3.2.1.105 xref: MetaCyc:STRICTOSIDINE-BETA-GLUCOSIDASE-RXN -is_a: GO:0004553 ! hydrolase activity, hydrolyzing O-glycosyl compounds +is_a: GO:0008422 ! beta-glucosidase activity [Term] id: GO:0050423 @@ -293838,13 +293851,13 @@ id: GO:0050461 name: L-mimosine synthase activity namespace: molecular_function -def: "Catalysis of the reaction: O3-acetyl-L-serine + 3,4-dihydroxypyridine = 3-(3,4-dihydroxypyridin-1-yl)-L-alanine + acetate." [EC:2.5.1.52, MetaCyc:L-MIMOSINE-SYNTHASE-RXN] +def: "Catalysis of the reaction: O3-acetyl-L-serine + 3,4-dihydroxypyridine = 3-(3,4-dihydroxypyridin-1-yl)-L-alanine + acetate." [EC:2.5.1.52] synonym: "3-O-acetyl-L-serine:3,4-dihydroxypyridine 1-(2-amino-2-carboxyethyl)transferase activity" EXACT [EC:2.5.1.52] synonym: "O(3)-acetyl-L-serine acetate-lyase (adding 3,4-dihydroxypyridin-1-yl) activity" EXACT [EC:2.5.1.52] synonym: "O3-acetyl-L-serine acetate-lyase (adding 3,4-dihydroxypyridin-1-yl)" EXACT [EC:2.5.1.52] synonym: "O3-acetyl-L-serine:3,4-dihydroxypyridine 1-(2-amino-2-carboxyethyl)transferase activity" EXACT [EC:2.5.1.52] xref: EC:2.5.1.52 -xref: MetaCyc:L-MIMOSINE-SYNTHASE-RXN +xref: MetaCyc:RXN-7461 is_a: GO:0016765 ! transferase activity, transferring alkyl or aryl (other than methyl) groups [Term] @@ -294428,6 +294441,7 @@ name: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity namespace: molecular_function def: "Catalysis of the reaction: Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = GlcNAc-(1,4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol + UDP." [EC:2.4.1.227, MetaCyc:2.4.1.227-RXN] +comment: Note that EC classifies 'UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity ; GO:0051991' and 'undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity ; GO:0050511' under the same EC number, EC:2.4.1.227. subset: gosubset_prok synonym: "MurG transferase activity" RELATED [EC:2.4.1.227] synonym: "UDP-N-acetyl-D-glucosamine:N-acetyl-alpha-D-muramyl(oyl-L-Ala- gamma-D-Glu-L-Lys-D-Ala-D-Ala)-diphosphoundecaprenol beta-1,4-N-acetylglucosaminlytransferase activity" EXACT [EC:2.4.1.227] @@ -294435,9 +294449,7 @@ synonym: "undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase activity" EXACT [EC:2.4.1.227] synonym: "undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase activity" EXACT [] xref: EC:2.4.1.227 -xref: MetaCyc:NACGLCTRANS-RXN xref: MetaCyc:RXN-8976 -xref: MetaCyc:RXN-9672 is_a: GO:0008375 ! acetylglucosaminyltransferase activity [Term] @@ -302047,7 +302059,7 @@ synonym: "mutanase activity" EXACT [EC:3.2.1.59] xref: EC:3.2.1.59 xref: MetaCyc:3.2.1.59-RXN -is_a: GO:0015926 ! glucosidase activity +is_a: GO:0004558 ! alpha-glucosidase activity [Term] id: GO:0051119 @@ -308881,7 +308893,7 @@ synonym: "induction of autolysis in other organism" NARROW [] synonym: "induction of autolytic activity in other organism" NARROW [] synonym: "positive regulation of autolysin activity in another organism" BROAD [] -is_a: GO:0043946 ! positive regulation of catalytic activity in other organism during symbiotic interaction +is_a: GO:0043946 ! positive regulation of catalytic activity in other organism involved in symbiotic interaction [Term] id: GO:0051672 @@ -310470,11 +310482,12 @@ [Term] id: GO:0051808 -name: translocation of peptides or proteins into other organism during symbiotic interaction +name: translocation of peptides or proteins into other organism involved in symbiotic interaction namespace: biological_process def: "The directed movement of peptides or proteins produced by an organism to a location inside a second organism, where the two organisms are in a symbiotic interaction." [GOC:cc] subset: gosubset_prok -synonym: "transport of peptides or proteins into other organism during symbiotic interaction" EXACT [] +synonym: "translocation of peptides or proteins into other organism during symbiotic interaction" RELATED [GOC:tb] +synonym: "transport of peptides or proteins into other organism during symbiotic interaction" RELATED [] is_a: GO:0015031 ! protein transport is_a: GO:0051836 ! translocation of molecules into other organism involved in symbiotic interaction @@ -310770,10 +310783,11 @@ [Term] id: GO:0051837 -name: translocation of DNA into other organism during symbiotic interaction +name: translocation of DNA into other organism involved in symbiotic interaction namespace: biological_process def: "The directed movement of DNA from an organism to a location inside a second organism, where the two organisms are in a symbiotic interaction." [GOC:cc] -synonym: "transport of DNA into other organism during symbiotic interaction" EXACT [] +synonym: "translocation of DNA into other organism during symbiotic interaction" RELATED [GOC:tb] +synonym: "transport of DNA into other organism during symbiotic interaction" RELATED [] is_a: GO:0051027 ! DNA transport is_a: GO:0051836 ! translocation of molecules into other organism involved in symbiotic interaction @@ -310848,7 +310862,7 @@ def: "The directed movement of peptides or proteins produced by an organism to a location inside the symbiont organism. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction." [GOC:cc] subset: gosubset_prok synonym: "transport of peptides or proteins into symbiont" EXACT [] -is_a: GO:0051808 ! translocation of peptides or proteins into other organism during symbiotic interaction +is_a: GO:0051808 ! translocation of peptides or proteins into other organism involved in symbiotic interaction is_a: GO:0051862 ! translocation of molecules into symbiont [Term] @@ -312683,6 +312697,77 @@ is_a: GO:0016614 ! oxidoreductase activity, acting on CH-OH group of donors [Term] +id: GO:0051991 +name: UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity +namespace: molecular_function +def: "Catalysis of the reaction: N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UDP-N-acetyl-D-glucosamine = N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + UDP." [MetaCyc:NACGLCTRANS-RXN] +comment: Note that EC classifies 'UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity ; GO:0051991' and 'undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity ; GO:0050511' under the same EC number, EC:2.4.1.227. +subset: gosubset_prok +xref: EC:2.4.1.227 +xref: MetaCyc:NACGLCTRANS-RXN +is_a: GO:0008375 ! acetylglucosaminyltransferase activity +created_by: gwg +creation_date: 2010-07-06T11:53:19Z + +[Term] +id: GO:0051992 +name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity +namespace: molecular_function +def: "Catalysis of the reaction: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + di-trans,poly-cis-undecaprenyl phosphate = UMP + N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol." [EC:2.7.8.13, MetaCyc:PHOSNACMURPENTATRANS-RXN] +comment: Note that EC classifies 'UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity ; GO:0051992' and 'phospho-N-acetylmuramoyl-pentapeptide-transferase activity ; GO:0008963' under the same EC number, EC:2.7.8.13. +subset: gosubset_prok +xref: EC:2.7.8.13 +xref: MetaCyc:PHOSNACMURPENTATRANS-RXN +is_a: GO:0016780 ! phosphotransferase activity, for other substituted phosphate groups +created_by: gwg +creation_date: 2010-07-06T12:10:01Z + +[Term] +id: GO:0051993 +name: abscisic acid glucose ester beta-glucosidase activity +namespace: molecular_function +def: "Catalysis of the reaction: abscisic acid glucose ester + H2O = abscisic acid + beta-D-glucose." [PMID:16990135] +synonym: "ABA-GE beta-glucosidase activity" EXACT [] +is_a: GO:0008422 ! beta-glucosidase activity +created_by: gwg +creation_date: 2010-07-16T02:16:59Z + +[Term] +id: GO:0051994 +name: P-methyltransferase activity +namespace: molecular_function +def: "Catalysis of the transfer of a methyl group to the phosphorus atom of an acceptor molecule." [GOC:ai] +xref: EC:2.1.1.- +is_a: GO:0008168 ! methyltransferase activity +created_by: gwg +creation_date: 2010-07-16T04:39:34Z + +[Term] +id: GO:0051995 +name: Se-methyltransferase activity +namespace: molecular_function +def: "Catalysis of the transfer of a methyl group to the selenium atom of an acceptor molecule." [GOC:ai] +xref: EC:2.1.1.- +is_a: GO:0008168 ! methyltransferase activity +created_by: gwg +creation_date: 2010-07-16T04:48:08Z + +[Term] +id: GO:0051996 +name: squalene synthase activity +namespace: molecular_function +def: "Catalysis of the reaction: presqualene diphosphate + NADPH = squalene + NADP+ + diphosphate." [EC:2.5.1.21] +comment: Note that the two reactions performed by EC:2.5.1.21 are represented in GO by 'farnesyl-diphosphate farnesyltransferase activity ; GO:0004310' and 'squalene synthase activity ; GO:0051996'. +subset: gosubset_prok +synonym: "squalene synthase activity" EXACT [EC:2.5.1.21] +synonym: "squalene synthetase activity" EXACT [EC:2.5.1.21] +xref: EC:2.5.1.21 +xref: MetaCyc:RXN66-281 +is_a: GO:0004311 ! farnesyltranstransferase activity +created_by: gwg +creation_date: 2010-07-16T05:10:24Z + +[Term] id: GO:0052000 name: Type IV pili-dependent aggregation namespace: biological_process @@ -312930,7 +313015,7 @@ def: "The alteration by an organism of the levels of ethylene in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok is_a: GO:0052019 ! modulation by symbiont of host hormone or growth regulator levels -is_a: GO:0052449 ! modulation by organism of ethylene levels in other organism during symbiotic interaction +is_a: GO:0052449 ! modulation by organism of ethylene levels in other organism involved in symbiotic interaction [Term] id: GO:0052022 @@ -312939,7 +313024,7 @@ def: "The alteration by an organism of the levels of jasmonic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok is_a: GO:0052019 ! modulation by symbiont of host hormone or growth regulator levels -is_a: GO:0052456 ! modulation by organism of jasmonic acid levels in other organism during symbiotic interaction +is_a: GO:0052456 ! modulation by organism of jasmonic acid levels in other organism involved in symbiotic interaction [Term] id: GO:0052023 @@ -312948,7 +313033,7 @@ def: "The alteration by an organism of the levels of salicylic acid in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok is_a: GO:0052019 ! modulation by symbiont of host hormone or growth regulator levels -is_a: GO:0052469 ! modulation by organism of salicylic acid levels in other organism during symbiotic interaction +is_a: GO:0052469 ! modulation by organism of salicylic acid levels in other organism involved in symbiotic interaction [Term] id: GO:0052024 @@ -312963,7 +313048,7 @@ synonym: "up-regulation by symbiont of hormone or growth regulator levels in host" EXACT [] synonym: "upregulation by symbiont of hormone or growth regulator levels in host" EXACT [] is_a: GO:0052019 ! modulation by symbiont of host hormone or growth regulator levels -is_a: GO:0052513 ! positive regulation by organism of hormone or growth regulator levels in other organism during symbiotic interaction +is_a: GO:0052513 ! positive regulation by organism of hormone or growth regulator levels in other organism involved in symbiotic interaction [Term] id: GO:0052025 @@ -313007,7 +313092,7 @@ synonym: "up-regulation by symbiont of host signal transduction pathway" EXACT [] synonym: "upregulation by symbiont of host signal transduction pathway" EXACT [] is_a: GO:0052027 ! modulation by symbiont of host signal transduction pathway -is_a: GO:0052526 ! positive regulation by organism of signal transduction pathway in other organism during symbiotic interaction +is_a: GO:0052526 ! positive regulation by organism of signal transduction pathway in other organism involved in symbiotic interaction [Term] id: GO:0052029 @@ -313021,7 +313106,7 @@ synonym: "inhibition by symbiont of host signal transduction pathway" NARROW [] synonym: "negative modulation by organism of host signal transduction pathway" EXACT [] is_a: GO:0052027 ! modulation by symbiont of host signal transduction pathway -is_a: GO:0052493 ! negative regulation by organism of signal transduction pathway in other organism during symbiotic interaction +is_a: GO:0052493 ! negative regulation by organism of signal transduction pathway in other organism involved in symbiotic interaction [Term] id: GO:0052030 @@ -313053,7 +313138,7 @@ def: "Any process by which an organism modulates the frequency, rate or extent of the inflammatory response of the host organism; the inflammatory response is the immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok is_a: GO:0052031 ! modulation by symbiont of host defense response -is_a: GO:0052256 ! modulation by organism of inflammatory response of other organism during symbiotic interaction +is_a: GO:0052256 ! modulation by organism of inflammatory response of other organism involved in symbiotic interaction [Term] id: GO:0052033 @@ -313069,7 +313154,7 @@ synonym: "pathogen-associated molecular pattern dependent activation by organism of host innate immunity" EXACT [] is_a: GO:0052166 ! positive regulation by symbiont of host innate immunity is_a: GO:0052169 ! pathogen-associated molecular pattern dependent modulation by symbiont of host innate immunity -is_a: GO:0052257 ! pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism during symbiotic interaction +is_a: GO:0052257 ! pathogen-associated molecular pattern dependent induction by organism of innate immunity of other organism involved in symbiotic interaction [Term] id: GO:0052034 @@ -313103,7 +313188,7 @@ synonym: "up-regulation by symbiont of host inflammatory response" EXACT [] synonym: "upregulation by symbiont of host inflammatory response" EXACT [] is_a: GO:0052032 ! modulation by symbiont of host inflammatory response -is_a: GO:0052259 ! positive regulation by organism of inflammatory response of other organism during symbiotic interaction +is_a: GO:0052259 ! positive regulation by organism of inflammatory response of other organism involved in symbiotic interaction is_a: GO:0052509 ! positive regulation by symbiont of host defense response [Term] @@ -313180,7 +313265,7 @@ synonym: "suppression by symbiont of host PCD" EXACT [] synonym: "suppression by symbiont of host programmed cell death" EXACT [] is_a: GO:0052040 ! modulation by symbiont of host programmed cell death -is_a: GO:0052490 ! negative regulation by organism of programmed cell death in other organism during symbiotic interaction +is_a: GO:0052490 ! negative regulation by organism of programmed cell death in other organism involved in symbiotic interaction [Term] id: GO:0052042 @@ -313214,7 +313299,7 @@ def: "The activation by an organism of programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok synonym: "activation by organism of host programmed cell death" EXACT [] -is_a: GO:0052400 ! induction by organism of programmed cell death in other organism during symbiotic interaction +is_a: GO:0052400 ! induction by organism of programmed cell death in other organism involved in symbiotic interaction [Term] id: GO:0052045 @@ -313235,7 +313320,7 @@ synonym: "modification of host morphology or physiology via effector molecule" NARROW [] synonym: "modification of host morphology or physiology via ellicitor" NARROW [] is_a: GO:0044003 ! modification by symbiont of host morphology or physiology -is_a: GO:0052048 ! interaction with host via secreted substance during symbiotic interaction +is_a: GO:0052048 ! interaction with host via secreted substance involved in symbiotic interaction is_a: GO:0052212 ! modification of morphology or physiology of other organism via secreted substance involved in symbiotic interaction [Term] @@ -313250,10 +313335,11 @@ [Term] id: GO:0052048 -name: interaction with host via secreted substance during symbiotic interaction +name: interaction with host via secreted substance involved in symbiotic interaction namespace: biological_process def: "An interaction with the host organism mediated by a substance secreted by the other (symbiont) organism. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok +synonym: "interaction with host via secreted substance during symbiotic interaction" RELATED [GOC:dph] is_a: GO:0044046 ! interaction with host via substance released outside of symbiont is_a: GO:0052047 ! interaction with other organism via secreted substance involved in symbiotic interaction @@ -313263,8 +313349,8 @@ namespace: biological_process def: "An interaction with the host organism mediated by a substance secreted by the symbiont organism by a type III secretion system. The host is defined as the larger of the organisms involved in a symbiotic interaction." [GOC:mtg_pamgo_17jul06] subset: gosubset_prok -is_a: GO:0052048 ! interaction with host via secreted substance during symbiotic interaction -is_a: GO:0052210 ! interaction with other organism via protein secreted by type III secretion system during symbiotic interaction +is_a: GO:0052048 ! interaction with host via secreted substance involved in symbiotic interaction +is_a: GO:0052210 ! interaction with other organism via protein secreted by type III secretion system involved in symbiotic interaction [Term] id: GO:0052050 @@ -313272,8 +313358,8 @@ namespace: biological_process def: "An interaction with the host ... [truncated message content] |