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[Obo-svn-commit] SF.net SVN: obo:[3162] phenote/trunk/doc/phenote-website
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From: <no...@us...> - 2010-02-23 23:19:52
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Revision: 3162
http://obo.svn.sourceforge.net/obo/?rev=3162&view=rev
Author: nomi
Date: 2010-02-23 23:19:21 +0000 (Tue, 23 Feb 2010)
Log Message:
-----------
Some minor corrections
Modified Paths:
--------------
phenote/trunk/doc/phenote-website/developer-docs/dataadapter.shtml
phenote/trunk/doc/phenote-website/developer-docs/getting-source-code-in-eclipse.shtml
phenote/trunk/doc/phenote-website/developer-docs/index.shtml
phenote/trunk/doc/phenote-website/download.shtml
phenote/trunk/doc/phenote-website/events.shtml
phenote/trunk/doc/phenote-website/faq.shtml
phenote/trunk/doc/phenote-website/index.shtml
phenote/trunk/doc/phenote-website/ssi/header.html
Modified: phenote/trunk/doc/phenote-website/developer-docs/dataadapter.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/developer-docs/dataadapter.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/developer-docs/dataadapter.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -15,7 +15,10 @@
Creating a Phenote Data Adapter
</div>
-<p>First off if youve just downloaded phenote from sourceforge obo svn,
+<p><b>2/23/2010</b>: Please note that this document has not been checked
+ recently for accuracy.</p>
+
+<p>If you've just downloaded phenote from sourceforge obo svn,
the (latest) source is located in <code>phenote/trunk/src/java</code>. The most
important subdirectories under <code>src/java</code> for creating a data adapter are
<code>phenote/dataadapter</code> and <code>phenote/datamodel</code>.
@@ -296,4 +299,4 @@
<!--#include virtual="../ssi/footer.html" -->
-</body></html>
\ No newline at end of file
+</body></html>
Modified: phenote/trunk/doc/phenote-website/developer-docs/getting-source-code-in-eclipse.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/developer-docs/getting-source-code-in-eclipse.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/developer-docs/getting-source-code-in-eclipse.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -40,8 +40,6 @@
<P>If you go
to <a href="http://obo.svn.sourceforge.net/viewvc/obo/phenote/trunk/">http://obo.svn.sourceforge.net/viewvc/obo/phenote/trunk/</a>,
you can browse the Phenote source code and examine the change history.</p>
- </div>
-
<h1>Getting the Source Code with Eclipse</h1>
<h2>Build Paths</h2>
@@ -135,6 +133,7 @@
<p>If you wish to stay informed of every single svn commit, you can <a href="https://lists.sourceforge.net/lists/listinfo/obo-svn-commit">join the svn commits mailing list</a>.</p>
</div>
+ </div>
<!--#include virtual="../ssi/footer.html" -->
Modified: phenote/trunk/doc/phenote-website/developer-docs/index.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/developer-docs/index.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/developer-docs/index.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -20,7 +20,7 @@
<ul>
<li><a href="getting-source-code-in-eclipse.shtml">Getting the Source code</a> (command line or in Eclipse)
</li>
- <li><a href="doc/api/">Browse the API Javadocs</a></li>
+ <li><a href="/doc/api/">Browse the API Javadocs</a></li>
<li><a href="dataadapter.shtml">Working with Data Adapters</a>
</li>
<li><a href="developer-docs.shtml">Notes on adding new configuration
Modified: phenote/trunk/doc/phenote-website/download.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/download.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/download.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -18,10 +18,10 @@
<h2>For users</h2>
<h3>Phenote installer edition</h3>
Platform-specific installers are available for Phenote v1.7-b9 at <a href="https://sourceforge.net/project/showfiles.php?group_id=76834">SourceForge</a> or here:
- <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_macos_installer.dmg">MacOS X</a> |
- <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_windows_installer.exe">Windows</a> |
- <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_linux_installer.rpm">Linux</a> |
- <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_unix_installer.sh">Unix</a>
+ <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_macos_install4j.dmg">MacOS X</a> |
+ <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_windows_install4j.exe">Windows</a> |
+ <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_linux_install4j.rpm">Linux</a> |
+ <a href="http://www.phenote.org/phenote/1.7/Phenote_1_7-beta9_unix_install4j.sh">Unix</a>
<ol>
<li>Download your platform-specific package. (For MacOS, this should self-extract into a disk image. If it doesn't, double-click on the file. You should see an
icon for the "drive" that the Phenote application is on.)</li>
Modified: phenote/trunk/doc/phenote-website/events.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/events.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/events.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -16,7 +16,7 @@
<h1>Current News and Events</h1>
<h2>February, 2010</h2>
<ul>
- <li>02.25.2010, <a href="download.shtml">version 1.7-b9
+ <li>02.23.2010 - <a href="download.shtml">Version 1.7-b9
released</a> </li>
</ul>
<br>
@@ -36,6 +36,7 @@
<h2>June, 2008</h2>
<ul>
<li>06.05.2008, 8:30am PDT - Phenote Users Group, online meeting</li>
+ <li>06.11.2008 - <a href="http://www.phenote.org/phenote/1.6-beta6">Phenote release 1.6-beta6</a></li>
</ul>
<h2>April, 2008</h2>
Modified: phenote/trunk/doc/phenote-website/faq.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/faq.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/faq.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -19,22 +19,25 @@
<h1>General</h1>
<h3>How do I get started?</h3>
<p>
- You can lauch Phenote directly from your browser. Simply click on the Launch Phenote 'quick link' from the <a href="http://www.phenote.org/">main page</a> or the <a href="http://www.phenote.org/download.shtml">Downloads</a> page, and it will launch directly from your browser. It will take a couple of minutes to download all the components, but that's it.
+ Please visit the <a href="/download.shtml">Downloads</a> page to
+ download and install Phenote. It's easy!
</p>
<h3>What's the best forum to ask my burning questions?</h3>
<p>
- There's several discussion groups that are relevant to Phenote users. You'll find a list on our <a href="http://www.phenote.org/contact.shtml">Contact</a> page.
+ There are several discussion groups that are relevant to Phenote users. You'll find a list on our <a href="http://www.phenote.org/contact.shtml">Contact</a> page.
</p>
<h3>I found a bug in Phenote. How do I report errors?</h3>
<p>
- We want to know if there's any errors. Please use our <a href="http://www.sourceforge.net/tracker/?group_id=76834&atid=887913">Bug Report tracker</a>.
+ We want to know about any problems you have with Phenote. Please use our <a href="http://www.sourceforge.net/tracker/?group_id=76834&atid=887913">Bug Report tracker</a>.
</p>
<h3>There's a function/feature I wish Phenote had. Can you add it?</h3>
<p>
- You can request new features through our <a href="http://www.sourceforge.net/tracker/?group_id=76834&atid=887913">Feature Request tracker</a>. Please be sure to label the "Group" as a "new feature".
+ You can request new features through
+ our <a href="http://www.sourceforge.net/tracker/?group_id=76834&atid=887913">Feature
+ Request tracker</a>. Please be sure to select "new feature" as the Group.
</p>
<h1>Ontologies</h1>
- <h3>What kinds of ontologies can I use?</h3>
+ <h3>What kinds of ontologies can I use to annotate in Phenote?</h3>
<p>
You can use any kind of domain specific ontologies. While Phenote is a tool being developed for annotation of biological phenotypes, it can certainly be adapted to any domain whose knowledge is captured with ontologies.
</p>
@@ -48,7 +51,7 @@
</p>
<h3>Can I use my own ontologies?</h3>
<p>
- Yes you can! You don't have to use ontologies that are in public repositories if you don't want to. Please consult the <a href="http://www.phenote.org/help/">User Guide</a> for more detailed instructions...
+ Yes you can! You don't have to use ontologies that are in public repositories if you don't want to. Please consult the <a href="/help/">User Guide</a> for more detailed instructions...
</p>
<h3>Can I use my own pre-coordinated phenotype ontology?</h3>
<p>
@@ -67,7 +70,7 @@
<h1>Using Phenote</h1>
<h3>Is there some online documentation?</h3>
<p>
- You bet! Check out our <a href="http://www.phenote.org/help/">User's Guide</a></p>
+ You bet! Check out our <a href="/help/">User's Guide</a> (which is also included inside the Phenote application).</p>
<h3>When I'm annotating, I can't seem to find the right terms?</h3>
<p>
Sometimes a term you are looking for is really just a synonym of another term. Make sure you have "synonyms" selected under the "Settings" menu. </p>
Modified: phenote/trunk/doc/phenote-website/index.shtml
===================================================================
--- phenote/trunk/doc/phenote-website/index.shtml 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/index.shtml 2010-02-23 23:19:21 UTC (rev 3162)
@@ -92,7 +92,7 @@
<li class="events">
<p class="quick_link">
<img src="images/star.gif" alt="" class="icon_green"/>
- <a href="link">Event</a>, Date, Location
+ <a href="">Event</a>, Date, Location
</p>
</li>
</ul>
Modified: phenote/trunk/doc/phenote-website/ssi/header.html
===================================================================
--- phenote/trunk/doc/phenote-website/ssi/header.html 2010-02-23 22:24:38 UTC (rev 3161)
+++ phenote/trunk/doc/phenote-website/ssi/header.html 2010-02-23 23:19:21 UTC (rev 3162)
@@ -1,12 +1,12 @@
<div id="header">
<span id="floatright">
- <a href="/index.html" title="Home">Home</a>
+ <a href="/index.shtml" title="Home">Home</a>
|
<script type="text/javascript">
obfuscate("lists.sourceforge.net","obo-phenote","Contact");
</script>
</span>
- <a class="image" href="/index.html"
+ <a class="image" href="/index.shtml"
title="Phenote: A Phenotype Annotation Tool">
<img src="/images/elephant_header.jpg"
alt="Phenote"
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