[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype_xp.obo, 1.150, 1.151

SourceForge Headquarters 225 Broadway Suite 1600 San Diego, CA 92101 +1 (858) 454-5900

Update of /cvsroot/obo/obo/ontology/phenotype
In directory 23jxhf1.ch3.sourceforge.com:/tmp/cvs-serv19481

Modified Files:
	mammalian_phenotype_xp.obo 
Log Message:
update

Index: mammalian_phenotype_xp.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype_xp.obo,v
retrieving revision 1.150
retrieving revision 1.151
diff -C2 -d -r1.150 -r1.151
*** mammalian_phenotype_xp.obo	29 Oct 2009 13:22:54 -0000	1.150
--- mammalian_phenotype_xp.obo	29 Oct 2009 13:28:34 -0000	1.151
***************
*** 1552,1557 ****
  [Term]
  id: MP:0000405 ! abnormal auchene hairs
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0001893 ! auchene hair
  
  [Term]
--- 1552,1558 ----
  [Term]
  id: MP:0000405 ! abnormal auchene hairs
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0001893 ! auchene hair
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 1562,1567 ****
  [Term]
  id: MP:0000407 ! abnormal duvet hair
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0001895 ! duvet hair
  
  [Term]
--- 1563,1569 ----
  [Term]
  id: MP:0000407 ! abnormal duvet hair
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0001895 ! duvet hair
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 1661,1666 ****
  [Term]
  id: MP:0000427 ! abnormal hair cycle
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0042633 ! hair cycle
  
  [Term]
--- 1663,1669 ----
  [Term]
  id: MP:0000427 ! abnormal hair cycle
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0042633 ! hair cycle
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 1670,1674 ****
  intersection_of: inheres_in _:cranium_or_face
  
- 
  [Term]
  id: MP:0002189 ! abnormal myocardial trabeculae morphology
--- 1673,1676 ----
***************
*** 1749,1754 ****
  [Term]
  id: MP:0002817 ! abnormal tooth mineralization
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0034505 ! tooth mineralization
  
  [Term]
--- 1751,1757 ----
  [Term]
  id: MP:0002817 ! abnormal tooth mineralization
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0034505 ! tooth mineralization
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 1918,1929 ****
  [Term]
  id: MP:0000479 ! abnormal intestinal cell morphology
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in CL:0000584 ! enterocyte
  
  [Term]
  id: MP:0000501 ! abnormal digestive secretion
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0046903 ! secretion
  intersection_of: has_central_participant MA:0002431 ! digestive system
  
  [Term]
--- 1921,1934 ----
  [Term]
  id: MP:0000479 ! abnormal intestinal cell morphology
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in CL:0000584 ! enterocyte
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
  id: MP:0000501 ! abnormal digestive secretion
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0046903 ! secretion
  intersection_of: has_central_participant MA:0002431 ! digestive system
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2175,2180 ****
  [Term]
  id: MP:0000527 ! abnormal kidney development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0001822 ! kidney development
  
  [Term]
--- 2180,2186 ----
  [Term]
  id: MP:0000527 ! abnormal kidney development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0001822 ! kidney development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2185,2191 ****
  [Term]
  id: MP:0000530 ! abnormal kidney vasculature
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000368 ! kidney
  intersection_of: towards MA:0000060 ! blood vessel
  
  [Term]
--- 2191,2198 ----
  [Term]
  id: MP:0000530 ! abnormal kidney vasculature
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000368 ! kidney
  intersection_of: towards MA:0000060 ! blood vessel
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2380,2386 ****
  [Term]
  id: MP:0000569 ! abnormal digit pigmentation
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0043473 ! pigmentation
  intersection_of: has_central_participant MA:0000690 ! limb digit
  
  [Term]
--- 2387,2394 ----
  [Term]
  id: MP:0000569 ! abnormal digit pigmentation
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0043473 ! pigmentation
  intersection_of: has_central_participant MA:0000690 ! limb digit
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2470,2475 ****
  [Term]
  id: MP:0000596 ! abnormal liver development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0001889 ! liver development
  
  [Term]
--- 2478,2484 ----
  [Term]
  id: MP:0000596 ! abnormal liver development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0001889 ! liver development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2620,2625 ****
  [Term]
  id: MP:0000628 ! abnormal mammary gland development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0030879 ! mammary gland development
  
  [Term]
--- 2629,2635 ----
  [Term]
  id: MP:0000628 ! abnormal mammary gland development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0030879 ! mammary gland development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2910,2915 ****
  [Term]
  id: MP:0000704 ! abnormal thymus development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0048538 ! thymus development
  
  [Term]
--- 2920,2926 ----
  [Term]
  id: MP:0000704 ! abnormal thymus development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0048538 ! thymus development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2975,2980 ****
  [Term]
  id: MP:0000729 ! abnormal myogenesis
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0055001 ! muscle cell development
  
  [Term]
--- 2986,2992 ----
  [Term]
  id: MP:0000729 ! abnormal myogenesis
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0055001 ! muscle cell development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 2991,2996 ****
  [Term]
  id: MP:0000733 ! abnormal muscle development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0007517 ! muscle development
  
  [Term]
--- 3003,3009 ----
  [Term]
  id: MP:0000733 ! abnormal muscle development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0007517 ! muscle development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3070,3080 ****
  [Term]
  id: MP:0000750 ! abnormal muscle regeneration
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0043403! skeletal muscle regeneration
  
  [Term]
  id: MP:0000751 ! myopathy
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000165 ! skeletal muscle
  
  [Term]
--- 3083,3095 ----
  [Term]
  id: MP:0000750 ! abnormal muscle regeneration
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0043403! skeletal muscle regeneration
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
  id: MP:0000751 ! myopathy
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000165 ! skeletal muscle
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3117,3122 ****
  [Term]
  id: MP:0000763 ! abnormal filiform papillae
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0002678 ! filiform papilla
  
  [Term]
--- 3132,3138 ----
  [Term]
  id: MP:0000763 ! abnormal filiform papillae
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0002678 ! filiform papilla
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3145,3150 ****
  [Term]
  id: MP:0000776 ! abnormal inferior colliculus
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0001067 ! inferior colliculus
  
  [Term]
--- 3161,3167 ----
  [Term]
  id: MP:0000776 ! abnormal inferior colliculus
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0001067 ! inferior colliculus
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3182,3187 ****
  [Term]
  id: MP:0000786 ! abnormal embryonic neuroepithelial layer differentiation
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0048884 ! neuromast development
  
  [Term]
--- 3199,3205 ----
  [Term]
  id: MP:0000786 ! abnormal embryonic neuroepithelial layer differentiation
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0048884 ! neuromast development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3257,3262 ****
  [Term]
  id: MP:0000808 ! abnormal hippocampus development
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in GO:0021766 ! hippocampus development
  
  [Term]
--- 3275,3281 ----
  [Term]
  id: MP:0000808 ! abnormal hippocampus development
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in GO:0021766 ! hippocampus development
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3375,3380 ****
  [Term]
  id: MP:0000834 ! abnormal subthalamus morphology
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000181 ! ventral thalamus
  
  [Term]
--- 3394,3400 ----
  [Term]
  id: MP:0000834 ! abnormal subthalamus morphology
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000181 ! ventral thalamus
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3427,3432 ****
  [Term]
  id: MP:0000846 ! abnormal medulla oblongata
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000206 ! medulla oblongata
  
  [Term]
--- 3447,3453 ----
  [Term]
  id: MP:0000846 ! abnormal medulla oblongata
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000206 ! medulla oblongata
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3555,3587 ****
  intersection_of: PATO:0001781 ! irregular thickness
  intersection_of: inheres_in MA:0000994 ! cerebellum external granule cell layer
! !!!
! ![Term]
! !id: MP:0004996 ! abnormal CNS synapse formation
! !intersection_of: PATO:0000460 ! abnormal
! !intersection_of: towards GO:0007416 ! synaptogenesis
! !intersection_of: inheres_in MA:0000167 ! central nervous system
! !!!
! ![Term]
  id: MP:0004998 ! decreased CNS synapse formation
! !intersection_of: PATO:0000911 ! decreased rate
! !intersection_of: towards GO:0007416 ! synaptogenesis
! !intersection_of: inheres_in MA:0000167 ! central nervous system
! !!!
! ![Term]
! !id: MP:0004997 ! increased CNS synapse formation
! !intersection_of: PATO:0000912 ! increased rate
! !intersection_of: towards GO:0007416 ! synaptogenesis
! !intersection_of: inheres_in MA:0000167 ! central nervous system
! !!!
! ![Term]
! !id: MP:0002924 ! delayed CNS synapse formation
! !intersection_of: PATO:0000502 ! delayed
! !intersection_of: towards GO:0007416 ! synaptogenesis
! !intersection_of: inheres_in MA:0000167 ! central nervous system
  
  [Term]
  id: MP:0000875 ! abnormal cerebellar Purkinje cell layer
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000997 ! cerebellum purkinje cell layer
  
  [Term]
--- 3576,3610 ----
  intersection_of: PATO:0001781 ! irregular thickness
  intersection_of: inheres_in MA:0000994 ! cerebellum external granule cell layer
! 
! [Term]
! id: MP:0004996 ! abnormal CNS synapse formation
! intersection_of: PATO:0000001 ! quality
! intersection_of: inheres_in GO:0007416 ! synaptogenesis
! intersection_of: has_central_participant MA:0000167 ! central nervous system
! intersection_of: qualifier PATO:0000460 ! abnormal
! 
! [Term]
  id: MP:0004998 ! decreased CNS synapse formation
! intersection_of: PATO:0000911 ! decreased rate
! intersection_of: inheres_in GO:0007416 ! synaptogenesis
! intersection_of: has_central_participant MA:0000167 ! central nervous system
! 
! [Term]
! id: MP:0004997 ! increased CNS synapse formation
! intersection_of: PATO:0000912 ! increased rate
! intersection_of: inheres_in GO:0007416 ! synaptogenesis
! intersection_of: has_central_participant MA:0000167 ! central nervous system
! 
! [Term]
! id: MP:0002924 ! delayed CNS synapse formation
! intersection_of: PATO:0000502 ! delayed
! intersection_of: inheres_in GO:0007416 ! synaptogenesis
! intersection_of: has_central_participant MA:0000167 ! central nervous system
  
  [Term]
  id: MP:0000875 ! abnormal cerebellar Purkinje cell layer
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000997 ! cerebellum purkinje cell layer
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3592,3597 ****
  [Term]
  id: MP:0000877 ! abnormal Purkinje cell morphology
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in CL:0000121 ! Purkinje cell
  
  [Term]
--- 3615,3621 ----
  [Term]
  id: MP:0000877 ! abnormal Purkinje cell morphology
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in CL:0000121 ! Purkinje cell
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]
***************
*** 3623,3628 ****
  [Term]
  id: MP:0000886 ! abnormal cerebellar granule layer
! intersection_of: PATO:0000460 ! abnormal
  intersection_of: inheres_in MA:0000993 ! cerebellum granule cell layer
  
  [Term]
--- 3647,3653 ----
  [Term]
  id: MP:0000886 ! abnormal cerebellar granule layer
! intersection_of: PATO:0000001 ! quality
  intersection_of: inheres_in MA:0000993 ! cerebellum granule cell layer
+ intersection_of: qualifier PATO:0000460 ! abnormal
  
  [Term]