[Obo-format] NCBOStyleOWLTest Errors

[Syed H. T. <ha...@cs...>]

Hi,

I have downloaded OBO API source from SVN, and I am trying to look at the
OboInOwl transformation.

I simply run NCBOStyleOWLTest.java as a JUnit test to see
NCBOOboInOWLMetadataMapping, and I get the following 2 errors:

"testContents"
--
java.lang.NoSuchFieldError: index
    at
org.semanticweb.owl.util.OWLObjectTypeIndexProvider.<clinit>(OWLObjectTypeIndexProvider.java:59)
    at uk.ac.manchester.cs.owl.OWLObjectImpl.<clinit>(OWLObjectImpl.java:50)
    at
uk.ac.manchester.cs.owl.AbstractInMemOWLOntologyFactory.createOWLOntology(AbstractInMemOWLOntologyFactory.java:63)
    at
uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:150)
    at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:461)
    at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:430)
    at org.obo.owl.dataadapter.OWLAdapter.readOntology(OWLAdapter.java:421)
    at org.obo.owl.dataadapter.OWLAdapter.doOperation(OWLAdapter.java:385)
    at
org.obo.owl.test.NCBOStyleOWLTest.getSessionFromResources(NCBOStyleOWLTest.java:53)
    at org.obo.owl.test.AbstractOWLTest.setUp(AbstractOWLTest.java:47)
    at junit.framework.TestCase.runBare(TestCase.java:125)
    at junit.framework.TestResult$1.protect(TestResult.java:106)
    at junit.framework.TestResult.runProtected(TestResult.java:124)
    at junit.framework.TestResult.run(TestResult.java:109)
    at junit.framework.TestCase.run(TestCase.java:118)
    at junit.framework.TestSuite.runTest(TestSuite.java:208)
    at junit.framework.TestSuite.run(TestSuite.java:203)
    at
org.eclipse.jdt.internal.junit.runner.junit3.JUnit3TestReference.run(JUnit3TestReference.java:128)
    at
org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:460)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:673)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:386)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:196)


"testHasLoaded"
--
java.lang.NoClassDefFoundError
    at
uk.ac.manchester.cs.owl.AbstractInMemOWLOntologyFactory.createOWLOntology(AbstractInMemOWLOntologyFactory.java:63)
    at
uk.ac.manchester.cs.owl.ParsableOWLOntologyFactory.loadOWLOntology(ParsableOWLOntologyFactory.java:150)
    at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntology(OWLOntologyManagerImpl.java:461)
    at
uk.ac.manchester.cs.owl.OWLOntologyManagerImpl.loadOntologyFromPhysicalURI(OWLOntologyManagerImpl.java:430)
    at org.obo.owl.dataadapter.OWLAdapter.readOntology(OWLAdapter.java:421)
    at org.obo.owl.dataadapter.OWLAdapter.doOperation(OWLAdapter.java:385)
    at
org.obo.owl.test.NCBOStyleOWLTest.getSessionFromResources(NCBOStyleOWLTest.java:53)
    at org.obo.owl.test.AbstractOWLTest.setUp(AbstractOWLTest.java:47)
    at junit.framework.TestCase.runBare(TestCase.java:125)
    at junit.framework.TestResult$1.protect(TestResult.java:106)
    at junit.framework.TestResult.runProtected(TestResult.java:124)
    at junit.framework.TestResult.run(TestResult.java:109)
    at junit.framework.TestCase.run(TestCase.java:118)
    at junit.framework.TestSuite.runTest(TestSuite.java:208)
    at junit.framework.TestSuite.run(TestSuite.java:203)
    at
org.eclipse.jdt.internal.junit.runner.junit3.JUnit3TestReference.run(JUnit3TestReference.java:128)
    at
org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:460)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:673)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:386)
    at
org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.main(RemoteTestRunner.java:196)

This one looks like a missing class/JAR file. Is there another JAR file I
need from somewhere to get this to work?


Has anyone got any idea of what I am doing wrong?


Regards,
Hamid

ha...@cs...