From: <cj...@fr...> - 2008-08-28 01:07:02
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* Set definition of SO:0000145 to "A codon that has been redefined at translation. The redefinition may be as a result of translational bypass, translational frameshifting or stop codon readthrough." * Added definition dbxref SO:xp to SO:0000145 * Deleted SO:0000240 --disjoint_from--> SO:0001026 * Changed name of SO:0000375 from "rRNA_5.8S" to "rRNA_5_8S" * Changed definition of SO:0000375 from "5.8S ribosomal RNA (5.8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5.8S rRNA is also found in archaea." to "5_8S ribosomal RNA (5. 8S rRNA) is a component of the large subunit of the eukaryotic ribosome. It is transcribed by RNA polymerase I as part of the 45S precursor that also contains 18S and 28S rRNA. Functionally, it is thought that 5.8S rRNA may be involved in ribosome translocation. It is also known to form covalent linkage to the p53 tumour suppressor protein. 5_8S rRNA is also found in archaea." * Deleted SO:0000400 --disjoint_from--> SO:0001026 * Deleted SO:0000654 --has_origin--> SO:0000742 * Created link SO:0000654 -part_of-> SO:0000742 * changed "completes" status of SO:0000654 --part_of--> SO:0000742 to true * Deleted SO:0000697 --associated_with--> SO:0000883 * Created link SO:0000697 -has_part-> SO:0000883 * changed "completes" status of SO:0000697 --has_part--> SO:0000883 to true * Deleted SO:0000698 --OBO_REL:is_a--> SO:0000697 * Deleted SO:0000698 --associated_with--> SO:0000884 * Created link SO:0000698 -has_part-> SO:0000884 * changed "completes" status of SO:0000698 --has_part--> SO:0000884 to true * Created link SO:0000698 -OBO_REL:is_a-> SO:0000693 * changed "completes" status of SO:0000698 --OBO_REL:is_a--> SO:0000693 to true * Deleted SO:0000710 --associated_with--> SO:0000885 * Created link SO:0000710 -has_part-> SO:0000885 * changed "completes" status of SO:0000710 --has_part--> SO:0000885 to true * added secondary id SO:0000826 to SO:0000741 * Added synonym "kinetoplast_chromosome" to SO:0000741 * Changed synonym scope of SO:0000741 from "Related" to "Exact" * added secondary id SO:0000827 to SO:0000742 * Changed definition of SO:0000742 from "A maxicircle is a replicon, part of a kinetoplast, that contains openreading frames and replicates via a rolling circle method." to "A maxicircle is a replicon, part of a kinetoplast, that contains open reading frames and replicates via a rolling circle method." * Added synonym "maxicircle_chromosome" to SO:0000742 * Changed synonym scope of SO:0000742 from "Related" to "Exact" * Deleted SO:0000826 --has_origin--> SO:0000741 * Deleted SO:0000826 --OBO_REL:is_a--> SO:0000340 * Deleted SO:0000827 --OBO_REL:is_a--> SO:0000826 * Deleted SO:0000974 --OBO_REL:is_a--> SO:0000826 * Destroyed object SO:0000826 * Deleted SO:0000827 --OBO_REL:is_a--> SO:0000826 * Deleted SO:0000827 --has_origin--> SO:0000742 * Destroyed object SO:0000827 * Changed definition of SO:0000881 from "An attribute describing am mRNA sequences that has been reprogrammed at translation, causing localized alterations." to "An attribute describing an mRNA sequence that has been reprogrammed at translation, causing localized alterations." * Deleted SO:0000883 --OBO_REL:is_a--> SO:0000882 * Created link SO:0000883 -OBO_REL:is_a-> SO:0000145 * Deleted SO:0000974 --OBO_REL:is_a--> SO:0000826 * Deleted SO:0000974 --has_origin--> SO:0000980 * Destroyed object SO:0000974 * Deleted SO:0000975 --has_origin--> SO:0000980 * Created link SO:0000975 -part_of-> SO:0000980 * changed "completes" status of SO:0000975 --part_of--> SO:0000980 to true * added secondary id SO:0000974 to SO:0000980 * Added synonym "minicircle_chromosome" to SO:0000980 * Changed synonym scope of SO:0000980 from "Related" to "Exact" * Deleted SO:0001026 --disjoint_from--> SO:0000968 * Deleted SO:0001026 --disjoint_from--> SO:0000400 * Deleted SO:0001026 --disjoint_from--> SO:0000240 * Changed name of SO:0001255 from "Autopolyploid" to "autopolyploid" * Changed name of SO:0001256 from "Allopolyploid" to "allopolyploid" * Changed comment from "If A is a feature with multiple regions such as a multi exon transcript, the supporting EST evidence is complete if each of the regions is supported by an equivalent region in B. Also there must be no extra regions in B that are not represented in A. This relationship was requested by jeltje on the SO term tracker. The thread for the discussion is available here: http://sourceforge.net/tracker/index.php?func=detail&aid=1917222&group_id=72703&atid=810408." to "If A is a feature with multiple regions such as a multi exon transcript, the supporting EST evidence is complete if each of the regions is supported by an equivalent region in B. Also there must be no extra regions in B that are not represented in A. This relationship was requested by jeltje on the SO term tracker. The thread for the discussion is available can be accessed via tracker ID:1917222." * Changed comment from "This relationship was requested by nlw on the SO term tracker. The thread for the discussion is available here: http://sourceforge.net/tracker/index.php?func=detail&aid=1911481&group_id=72703&atid=810408." to "This relationship was requested by nlw on the SO term tracker. The thread for the discussion is available can be accessed via tracker ID:1917222." |