[Obo-phenotype-commits] obo/ontology/phenotype mammalian_phenotype.obo, 1.186, 1.187 mosquito_insecticide_resistance.obo, 1.172, 1.173

[Seth C. <sjc...@us...>]

Update of /cvsroot/obo/obo/ontology/phenotype
In directory sc8-pr-cvs3.sourceforge.net:/tmp/cvs-serv13229/phenotype

Modified Files:
	mammalian_phenotype.obo mosquito_insecticide_resistance.obo 
Log Message:
Automated file update

Index: mammalian_phenotype.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v
retrieving revision 1.186
retrieving revision 1.187
diff -C2 -d -r1.186 -r1.187
*** mammalian_phenotype.obo	17 Jul 2008 07:01:54 -0000	1.186
--- mammalian_phenotype.obo	20 Jul 2008 07:02:31 -0000	1.187
***************
*** 1,4 ****
  format-version: 1.2
! date: 16:07:2008 16:46
  saved-by: csmith
  auto-generated-by: OBO-Edit 1.101
--- 1,4 ----
  format-version: 1.2
! date: 18:07:2008 16:23
  saved-by: csmith
  auto-generated-by: OBO-Edit 1.101
***************
*** 2484,2488 ****
  id: MP:0000427
  name: abnormal hair cycle
! def: "aberrant growth or asynchronous timing of the hair growth " [J:65302]
  is_a: MP:0002073 ! abnormal hair growth
  
--- 2484,2488 ----
  id: MP:0000427
  name: abnormal hair cycle
! def: "aberrant timing of growth and loss of hair (coat)" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
  is_a: MP:0002073 ! abnormal hair growth
  
***************
*** 9941,9945 ****
  id: MP:0001664
  name: abnormal digestion
! def: "altered ability of the mechanical, chemical, and enzymatic processes of the body to convert ingested food into material suitable for assimilation for synthesis of tissues or liberation of energy " [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  synonym: "abnormal digestive function" EXACT []
  is_a: MP:0001663 ! abnormal digestive system physiology
--- 9941,9945 ----
  id: MP:0001664
  name: abnormal digestion
! def: "altered ability of the mechanical, chemical, and enzymatic processes of the body to convert ingested food into material suitable for assimilation for synthesis of tissues or liberation of energy" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  synonym: "abnormal digestive function" EXACT []
  is_a: MP:0001663 ! abnormal digestive system physiology
***************
*** 9954,9958 ****
  id: MP:0001666
  name: abnormal nutrient absorption
! def: "anomalous ability of the body to take in constituents of food necessary for normal physiologic function" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  is_a: MP:0001663 ! abnormal digestive system physiology
  
--- 9954,9958 ----
  id: MP:0001666
  name: abnormal nutrient absorption
! def: "anomaly in the ability of the body to take in constituents of food necessary for normal physiological function" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"]
  is_a: MP:0001663 ! abnormal digestive system physiology
  
***************
*** 19496,19500 ****
  name: abnormal cell migration
  def: "defect in the movement of cells during developmental or chemotactic processes" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
! is_a: MP:0005384 ! cellular phenotype
  
  [Term]
--- 19496,19500 ----
  name: abnormal cell migration
  def: "defect in the movement of cells during developmental or chemotactic processes" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
! is_a: MP:0005621 ! abnormal cell physiology
  
  [Term]
***************
*** 25713,25719 ****
  name: chromosome breakage
  alt_id: MP:0002008
! def: "chromosome instability in the from of increased frequency of spontaneous breakage with or without rearrangements" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
! synonym: "chromosomal instability" EXACT []
! is_a: MP:0003111 ! abnormal nucleus morphology
  
  [Term]
--- 25713,25718 ----
  name: chromosome breakage
  alt_id: MP:0002008
! def: "chromosome instability in the form of increased frequency of spontaneous breakage with or without rearrangements" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
! is_a: MP:0008866 ! chromosomal instability
  
  [Term]
***************
*** 48047,48051 ****
  id: MP:0008847
  name: abnormal suprachiasmatic nucleus morphology
! def: "any structural anomaly of an ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm; it recieves input from the retina and influences neuroendocrine function" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MESH:A08.186.211.730.317.357.342.625]
  is_a: MP:0000837 ! abnormal hypothalamus morphology
  
--- 48046,48050 ----
  id: MP:0008847
  name: abnormal suprachiasmatic nucleus morphology
! def: "any structural anomaly of an ovoid densely packed collection of small cells of the anterior hypothalamus lying close to the midline in a shallow impression of the optic chiasm; it receives input from the retina and influences neuroendocrine function" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition", MESH:A08.186.211.730.317.357.342.625]
  is_a: MP:0000837 ! abnormal hypothalamus morphology
  
***************
*** 48091,48094 ****
--- 48090,48174 ----
  is_a: MP:0000013 ! abnormal adipose tissue distribution
  
+ [Term]
+ id: MP:0008854
+ name: bleb
+ def: "presence of a blister-like, nearly hemispherical structure formed during embryonic development filled with air, serous fluid or blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ synonym: "blistering" BROAD []
+ synonym: "bulla" EXACT []
+ is_a: MP:0001191 ! abnormal skin condition
+ 
+ [Term]
+ id: MP:0008855
+ name: eye bleb
+ def: "presence of blister-like structures formed in the eye during embryonic development that are usually filled with blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0001286 ! abnormal eye development
+ 
+ [Term]
+ id: MP:0008856
+ name: fetal bleb
+ def: "presence of subepidermal blister-like structures on the skin, often on the head, formed during embryonic development and usually filled with blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0003941 ! abnormal skin development
+ 
+ [Term]
+ id: MP:0008857
+ name: myelencephalic blebs
+ def: "presence of blister-like structures formed on the posterior portion of the embryonic hindbrain that are usually filled with blood" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0006108 ! abnormal hindbrain development
+ 
+ [Term]
+ id: MP:0008858
+ name: abnormal hair cycle anagen phase
+ def: "anomaly in the growth phase of the hair cycle" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0000427 ! abnormal hair cycle
+ 
+ [Term]
+ id: MP:0008859
+ name: abnormal hair cycle catagen phase
+ def: "anomaly in the phase of the hair growth cycle during which cell proliferation ceases, the hair follicle shortens, and an anchored hair is produced" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0000427 ! abnormal hair cycle
+ 
+ [Term]
+ id: MP:0008860
+ name: abnormal hair cycle telogen phase
+ def: "anomaly in the resting or quiescent phase of the hair growth cycle which follows cessation of proliferation (catagen) and preceeds hair loss" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0000427 ! abnormal hair cycle
+ 
+ [Term]
+ id: MP:0008861
+ name: abnormal hair shedding
+ def: "anomaly in the hair cycle changes the timing of the hair loss that normally follows the anagen phase" [MGI:llw2 "Linda Washburn, Mouse Genome Informatics Curator"]
+ is_a: MP:0000427 ! abnormal hair cycle
+ 
+ [Term]
+ id: MP:0008862
+ name: asymmetric snout
+ def: "presence of a snout that lacks mirrored identity on either side of the median plane" [MGI:mberry "Melissa Berry, Genetics Resources Curator"]
+ synonym: "snout asymmetry" EXACT []
+ is_a: MP:0000443 ! abnormal snout morphology
+ 
+ [Term]
+ id: MP:0008863
+ name: craniofacial asymmetry
+ def: "head or facila features that lack mirrored identity on either side of the median plane" [MGI:mberry "Melissa Berry, Genetics Resources Curator"]
+ is_a: MP:0003935 ! abnormal craniofacial development
+ 
+ [Term]
+ id: MP:0008864
+ name: abnormal intestinal secretion
+ def: "any anomaly in the quantity or rate of any substance transported from intestinal cells into the lumen of the intestine" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
+ is_a: MP:0000501 ! abnormal digestive secretion
+ 
+ [Term]
+ id: MP:0008865
+ name: abnormal intestinal absorption
+ def: "any anomaly in the quantity or rate of any substance taken up by intestinal cells from the lumen of the intestine" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
+ is_a: MP:0001664 ! abnormal digestion
+ 
+ [Term]
+ id: MP:0008866
+ name: chromosomal instability
+ def: "increase in the probability that whole chromosomes or large fractions of chromosomes are gained or lost during cell division, resulting in an imbalance in the number of chromosomes per cell (aneuploidy) and an enhanced rate of loss of heterozygosity" [PMID:12446840]
+ is_a: MP:0005621 ! abnormal cell physiology
+ 
  [Typedef]
  id: part_of