[Obo-phenotype-commits] obo/ontology/phenotype quality.obo, 1.53, 1.54 unit.obo, 1.10, 1.11

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Update of /cvsroot/obo/obo/ontology/phenotype
In directory sc8-pr-cvs3.sourceforge.net:/tmp/cvs-serv24471

Modified Files:
	quality.obo unit.obo 
Log Message:
update

Index: quality.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/quality.obo,v
retrieving revision 1.53
retrieving revision 1.54
diff -C2 -d -r1.53 -r1.54
*** quality.obo	26 Mar 2007 14:52:23 -0000	1.53
--- quality.obo	27 Mar 2007 22:38:57 -0000	1.54
***************
*** 1,4 ****
  format-version: 1.0
! date: 26:03:2007 15:46
  saved-by: George Gkoutos
  auto-generated-by: OBO-Edit 1.100-beta22
--- 1,4 ----
  format-version: 1.0
! date: 27:03:2007 23:16
  saved-by: George Gkoutos
  auto-generated-by: OBO-Edit 1.100-beta22
***************
*** 521,525 ****
  name: phase
  subset: attribute_slim
! is_a: PATO:0000078 ! rhythm quality

  [Term]
--- 521,525 ----
  name: phase
  subset: attribute_slim
! is_a: PATO:0001309 ! duration

  [Term]
***************
*** 1681,1694 ****
  [Term]
  id: PATO:0000303
! name: fast speed
  def: "A speed which is relative high." [PATOC:GVG]
  subset: value_slim
  is_a: PATO:0000008 ! speed/velocity

  [Term]
  id: PATO:0000304
! name: slow speed
  def: "A speed which is relative low." [PATOC:GVG]
  subset: value_slim
  is_a: PATO:0000008 ! speed/velocity

--- 1681,1696 ----
  [Term]
  id: PATO:0000303
! name: increased speed
  def: "A speed which is relative high." [PATOC:GVG]
  subset: value_slim
+ related_synonym: "fast speed" []
  is_a: PATO:0000008 ! speed/velocity

  [Term]
  id: PATO:0000304
! name: decreased speed
  def: "A speed which is relative low." [PATOC:GVG]
  subset: value_slim
+ related_synonym: "slow speed" []
  is_a: PATO:0000008 ! speed/velocity

***************
*** 2914,2921 ****
  [Term]
  id: PATO:0000515
! name: tolerant
  def: "A resistance quality inhering in a bearer by virtue of its ability to tolarete or being insensitive to a stimulus." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance

  [Term]
--- 2916,2923 ----
  [Term]
  id: PATO:0000515
! name: tolerant to
  def: "A resistance quality inhering in a bearer by virtue of its ability to tolarete or being insensitive to a stimulus." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance to

  [Term]
***************
*** 5936,5943 ****
  [Term]
  id: PATO:0001046
! name: resistance
  def: "A quality inhering in a bearer by virtue of its ability or inability to resist to a stimulus." [PATOC:GVG]
  subset: attribute_slim
! is_a: PATO:0001237 ! monadic quality of continuant

  [Term]
--- 5938,5945 ----
  [Term]
  id: PATO:0001046
! name: resistance to
  def: "A quality inhering in a bearer by virtue of its ability or inability to resist to a stimulus." [PATOC:GVG]
  subset: attribute_slim
! is_a: PATO:0001238 ! relational quality of continuant

  [Term]
***************
*** 6629,6636 ****
  [Term]
  id: PATO:0001178
! name: resistant
  def: "A resistance quality inhering in a bearer by virtue of its ability to resist to a stimulus." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance

  [Term]
--- 6631,6638 ----
  [Term]
  id: PATO:0001178
! name: resistant to
  def: "A resistance quality inhering in a bearer by virtue of its ability to resist to a stimulus." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance to

  [Term]
***************
*** 6929,6932 ****
--- 6931,6935 ----
  def: "A variability quality inhearing in a bearer by virtue of having or exhibiting variation." [Dictionary:http\://dictionary.reference.com/]
  subset: value_slim
+ exact_synonym: "variable" []
  is_a: PATO:0001303 ! variability

***************
*** 9506,9510 ****
  id: PATO:0001585
  name: conduction
! def: "The transmission of an entity through a medium." [Wikipedia:Wikipedia "http://en.wikipedia.org/wiki/Conduction"]
  comment: Examples could be heat or electricity or sound.
  subset: attribute_slim
--- 9509,9513 ----
  id: PATO:0001585
  name: conduction
! def: "The transmission of an entity through a medium." [PATOC:GVG]
  comment: Examples could be heat or electricity or sound.
  subset: attribute_slim
***************
*** 9957,9971 ****
  [Term]
  id: PATO:0001650
! name: increased resistance
! def: "A resistance which is relative high." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance

  [Term]
  id: PATO:0001651
! name: decreased resistance
! def: "A resistance which is relative low." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance

  [Term]
--- 9960,9974 ----
  [Term]
  id: PATO:0001650
! name: increased resistance to
! def: "A resistance to a stimulus which is relative high." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance to

  [Term]
  id: PATO:0001651
! name: decreased resistance to
! def: "A resistance to a stimulus which is relative low." [PATOC:GVG]
  subset: value_slim
! is_a: PATO:0001046 ! resistance to

  [Term]
***************
*** 10524,10528 ****
  [Term]
  id: PATO:0001729
! name: disposition to shed 
  def: "A prevailing tendency to lose an entitity by natural process." [PATOC:GVG]
  is_a: PATO:0001728 ! multi-cellular organismal disposition
--- 10527,10531 ----
  [Term]
  id: PATO:0001729
! name: disposition to shed
  def: "A prevailing tendency to lose an entitity by natural process." [PATOC:GVG]
  is_a: PATO:0001728 ! multi-cellular organismal disposition
***************
*** 10530,10538 ****
  [Term]
  id: PATO:0001730
! name: deciduous (generic) 
  def: "A disposition to shed body parts." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed 

  [Term]
--- 10533,10541 ----
  [Term]
  id: PATO:0001730
! name: deciduous (generic)
  def: "A disposition to shed body parts." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed

  [Term]
***************
*** 10542,10562 ****
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed 

  [Term]
  id: PATO:0001732
! name: non-deciduous (any body part) 
  def: "Lacking disposition to shed any body part." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed 

  [Term]
  id: PATO:0001733
! name: evergreen (plant) 
  def: "A disposition inhering in a plant to retain foliage." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed 

  [Term]
--- 10545,10565 ----
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed

  [Term]
  id: PATO:0001732
! name: non-deciduous (any body part)
  def: "Lacking disposition to shed any body part." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed

  [Term]
  id: PATO:0001733
! name: evergreen (plant)
  def: "A disposition inhering in a plant to retain foliage." [PATOC:GVG]
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed

  [Term]
***************
*** 10566,10570 ****
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed 

  [Term]
--- 10569,10573 ----
  subset: relational_slim
  subset: value_slim
! is_a: PATO:0001729 ! disposition to shed

  [Term]
***************
*** 10717,10720 ****
--- 10720,10854 ----
  is_a: PATO:0001752 ! peramorphic growth

+ [Term]
+ id: PATO:0001756
+ name: heat conduction
+ def: "The spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature." [Wikipedia:Wikipedia "http://www.wikipedia.org/"]
+ subset: attribute_slim
+ exact_synonym: "thermal conduction" []
+ is_a: PATO:0001585 ! conduction
+ 
+ [Term]
+ id: PATO:0001757
+ name: electrical conduction
+ def: "The movement of electrically charged particles through a transmission medium (electrical conductor)." [Wikipedia:Wikipedia "http://www.wikipedia.org/"]
+ subset: attribute_slim
+ is_a: PATO:0001585 ! conduction
+ 
+ [Term]
+ id: PATO:0001758
+ name: nerve conduction
+ subset: attribute_slim
+ is_a: PATO:0001585 ! conduction
+ 
+ [Term]
+ id: PATO:0001759
+ name: granular
+ def: "A composition quality inhering in a bearer by virtue of containing granules." [thefreedictionary.com:thefreedictionary.com "http://www.thefreedictionary.com/"]
+ subset: value_slim
+ is_a: PATO:0000025 ! composition
+ 
+ [Term]
+ id: PATO:0001760
+ name: female semi-fertile
+ subset: value_slim
+ is_a: PATO:0000277 ! female fertility
+ 
+ [Term]
+ id: PATO:0001761
+ name: male semi-fertile
+ subset: value_slim
+ is_a: PATO:0000279 ! male fertility
+ 
+ [Term]
+ id: PATO:0001762
+ name: male semi-sterile
+ subset: value_slim
+ is_a: PATO:0000279 ! male fertility
+ 
+ [Term]
+ id: PATO:0001763
+ name: female semi-sterile
+ subset: value_slim
+ is_a: PATO:0000277 ! female fertility
+ 
+ [Term]
+ id: PATO:0001764
+ name: increased age
+ def: "An age which is relative high." [PATOC:GVG]
+ subset: value_slim
+ is_a: PATO:0000011 ! age
+ 
+ [Term]
+ id: PATO:0001765
+ name: decreased age
+ def: "An age which is relative low." [PATOC:GVG]
+ subset: value_slim
+ is_a: PATO:0000011 ! age
+ 
+ [Term]
+ id: PATO:0001766
+ name: cellular polarity
+ def: "A cellular quality inhering in a cell by virtue of its anisotropic intracellular organization." [PATOC:GVG]
+ is_a: PATO:0001396 ! cellular quality
+ 
+ [Term]
+ id: PATO:0001767
+ name: semi-fertile
+ subset: value_slim
+ is_a: PATO:0000274 ! fertility
+ 
+ [Term]
+ id: PATO:0001768
+ name: semi-lethal (sensu genetics)
+ subset: value_slim
+ is_a: PATO:0000169 ! viability
+ 
+ [Term]
+ id: PATO:0001769
+ name: polarity
+ def: "Orientantion to similar coordinates." [PATOC:GVG]
+ subset: attribute_slim
+ is_a: PATO:0001237 ! monadic quality of continuant
+ 
+ [Term]
+ id: PATO:0001770
+ name: semi-viable
+ subset: value_slim
+ is_a: PATO:0000169 ! viability
+ 
+ [Term]
+ id: PATO:0001771
+ name: vicinity of
+ def: "A relational spatial quality where on entity is located near in space in relation to another entity." [answers.com:answers.com "http://www.answers.com/"]
+ subset: value_slim
+ is_a: PATO:0001631 ! relational spatial quality
+ 
+ [Term]
+ id: PATO:0001772
+ name: surrounding
+ def: "A relational spatial quality where on entity is extended on all sides of another entity simultaneously." [thefreedictionary.com:thefreedictionary.com "http://www.thefreedictionary.com/"]
+ subset: value_slim
+ exact_synonym: "encircling" []
+ is_a: PATO:0001631 ! relational spatial quality
+ 
+ [Term]
+ id: PATO:0001773
+ name: monophasic
+ def: "Having only one phase or stage." [hefreedictionary.com:hefreedictionary.com "http://www..thefreedictionary.com/"]
+ subset: value_slim
+ is_a: PATO:0000083 ! phase
+ 
+ [Term]
+ id: PATO:0001774
+ name: polyphasic
+ def: "Having or existing in many phases." [PATOC:GVG]
+ subset: value_slim
+ is_a: PATO:0000083 ! phase
+ 
+ [Term]
+ id: PATO:0001775
+ name: dorsal-ventral polarity
+ is_a: PATO:0001769 ! polarity
+ 
  [Typedef]
  id: is_magnitude_of

Index: unit.obo
===================================================================
RCS file: /cvsroot/obo/obo/ontology/phenotype/unit.obo,v
retrieving revision 1.10
retrieving revision 1.11
diff -C2 -d -r1.10 -r1.11
*** unit.obo	26 Mar 2007 14:54:05 -0000	1.10
--- unit.obo	27 Mar 2007 22:38:58 -0000	1.11
***************
*** 1,8 ****
  format-version: 1.0
! date: 26:03:2007 14:19
! saved-by: George Gkoutos
  auto-generated-by: OBO-Edit 1.100-beta22
  default-namespace: unit.ontology
! import: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo?revision=1.53

  [Term]
--- 1,9 ----
  format-version: 1.0
! date: 27:03:2007 22:59
! saved-by: George Gkoutos
  auto-generated-by: OBO-Edit 1.100-beta22
  default-namespace: unit.ontology
! namespace-id-rule: * UO:$sequence(7,0,9999999)$
! import: http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo?revision=1.54

  [Term]
***************
*** 2115,2118 ****
--- 2116,2169 ----
  relationship: is_unit_of PATO:0001747 ! radiation effective dose

+ [Term]
+ id: UO:0000261
+ name: conduction unit
+ namespace: unit.ontology
+ def: "A derived unit which represents a standard measurement of the transmission of an entity through a medium." [PATOC:GVG]
+ is_a: UO:0000046 ! derived unit
+ 
+ [Term]
+ id: UO:0000262
+ name: electrical conduction unit
+ namespace: unit.ontology
+ def: "A derived unit which represents a standard measurement of the movement of electrically charged particles through a transmission medium (electrical conductor)." [Wikipedia:Wikipedia "http://www.wikipedia.org/"]
+ is_a: UO:0000261 ! conduction unit
+ relationship: is_unit_of PATO:0001757 ! electrical conduction
+ 
+ [Term]
+ id: UO:0000263
+ name: heat conduction unit
+ namespace: unit.ontology
+ def: "A derived unit which represents a standard measurement of the spontaneous transfer of thermal energy through matter, from a region of higher temperature to a region of lower temperature." [Wikipedia:Wikipedia "http://www.wikipedia.org/"]
+ is_a: UO:0000261 ! conduction unit
+ relationship: is_unit_of PATO:0001756 ! heat conduction
+ 
+ [Term]
+ id: UO:0000264
+ name: siemens
+ namespace: unit.ontology
+ def: "An electrical conduction unit which is equal to A/V." [NIST:NIST "http://physics.nist.gov/cuu/Units/"]
+ related_synonym: "mho " []
+ related_synonym: "S" []
+ exact_synonym: "A·V^-1" []
+ is_a: UO:0000262 ! electrical conduction unit
+ 
+ [Term]
+ id: UO:0000265
+ name: watt per meter kelvin
+ namespace: unit.ontology
+ def: "An heat conduction unit which is equal to one watt divided by meter kelvin." [NIST:NIST "http://physics.nist.gov/cuu/Units/"]
+ exact_synonym: "W/m K" []
+ is_a: UO:0000263 ! heat conduction unit
+ 
+ [Term]
+ id: UO:0000266
+ name: electronvolt
+ namespace: unit.ontology
+ def: "A non-SI unit of energy (eV) defined as the energy acquired by a single unbound electron when it passes through an electrostatic potential difference of one volt. An electronvolt is equal to 1.602 176 53(14) x 10^-19 J." [Wikipedia:Wikipedia"http://www.wikipedia.org/"]
+ exact_synonym: "electron volt" []
+ exact_synonym: "eV" []
+ is_a: UO:0000111 ! energy unit
+ 
  [Typedef]
  id: is_magnitude_of