From: girlwithglasses <gir...@us...> - 2006-12-16 04:37:30
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Update of /cvsroot/obo/obo/ontology/phenotype In directory sc8-pr-cvs3.sourceforge.net:/tmp/cvs-serv1648/obo/ontology/phenotype Modified Files: mammalian_phenotype.obo Log Message: Automated file update Index: mammalian_phenotype.obo =================================================================== RCS file: /cvsroot/obo/obo/ontology/phenotype/mammalian_phenotype.obo,v retrieving revision 1.23 retrieving revision 1.24 diff -C2 -d -r1.23 -r1.24 *** mammalian_phenotype.obo 15 Dec 2006 04:38:27 -0000 1.23 --- mammalian_phenotype.obo 16 Dec 2006 04:37:25 -0000 1.24 *************** *** 1,4 **** format-version: 1.2 ! date: 13:12:2006 16:49 saved-by: csmith auto-generated-by: OBO-Edit 1.002 --- 1,4 ---- format-version: 1.2 ! date: 14:12:2006 16:43 saved-by: csmith auto-generated-by: OBO-Edit 1.002 *************** *** 158,162 **** id: MP:0000031 name: abnormal cochlea morphology ! def: "any anomaly, deformity, malformation, impairment or dysfunction of the cochlea" [cml:Cathleen M. Lutz_Mouse Genome Informatics Curator, J:21484, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] is_a: MP:0000026 ! abnormal inner ear morphology --- 158,162 ---- id: MP:0000031 name: abnormal cochlea morphology ! def: "any structural anomaly of the spiral-shaped bony canal in the inner ear containing the hair cells that transduce sound" [Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] is_a: MP:0000026 ! abnormal inner ear morphology *************** *** 169,174 **** [Term] id: MP:0000033 ! name: absent cochlear duct ! def: "missing spiral tube within the cochlea; contains the neuroepithelial receptor organ for hearing" [J:23837, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] is_a: MP:0003169 ! abnormal scala media morphology --- 169,175 ---- [Term] id: MP:0000033 ! name: absent scala media ! def: "missing spiral tube within the cochlea that contains the organ of Corti, the neuroepithelial receptor organ for hearing" [J:23837, Stedman's Medical Dictionary_27th edition:ISBN 0-683-40008-8] ! synonym: "absent cochlear duct" EXACT [] is_a: MP:0003169 ! abnormal scala media morphology *************** *** 25553,25558 **** [Term] id: MP:0004139 ! name: abnormal parietal cell morphology def: "malformation of the gastric acid producing epithelial cells that are distributed throughout the length of the gastric gland " [monikat:Monika Tomczuk_Mouse Genome Informatics Curator] is_a: MP:0003892 ! abnormal gastric gland --- 25554,25560 ---- [Term] id: MP:0004139 ! name: abnormal gastric parietal cell morphology def: "malformation of the gastric acid producing epithelial cells that are distributed throughout the length of the gastric gland " [monikat:Monika Tomczuk_Mouse Genome Informatics Curator] + synonym: "abnormal parietal cell morphology" EXACT [] is_a: MP:0003892 ! abnormal gastric gland *************** *** 26263,26266 **** --- 26265,26269 ---- name: abnormal crista ampullaris morphology def: "anomaly in the elevation found on the inner surface of the ampullae of each semicircular duct; filaments of the vestibular nerve pass through the crista to reach hair cells on its surface; the hair cells are capped by the cupula, a gelatinous protein-polysaccharide mass" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, J:60193] + synonym: "abnormal cristae" EXACT [] is_a: MP:0002428 ! abnormal semicircular canal *************** *** 27831,27834 **** --- 27834,27909 ---- [Term] + id: MP:0004482 + name: abnormal interdental cell morphology + def: "any structural anomaly of the long, spindle-shaped cells arranged in parallel rows, oriented with their vertical axis perpendicular to the luminal surface of the spiral limbus; they secrete K+ into the endolymph and secrete the tectoral membrane" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0004287 ! abnormal spiral limbus morphology + + [Term] + id: MP:0004483 + name: absent interdental cells + def: "absence of the long, spindle-shaped cells arranged in parallel rows, oriented with their vertical axis perpendicular to the luminal surface of the spiral limbus; they secrete K+ into the endolymph and secrete the tectoral membrane" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0004482 ! abnormal interdental cell morphology + + [Term] + id: MP:0004484 + name: altered response of heart to induced stress + def: "change in the physiological response of the heart to induced stress such as cardiac hypertrophy due to mechanical pressure overload from aortic banding" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0001544 ! abnormal cardiovascular system physiology + + [Term] + id: MP:0004485 + name: increased response of heart to induced stress + def: "increase in severity of the physiological response of the heart to induced stress such as cardiac hypertrophy due to mechanical pressure overload from aortic banding" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0004484 ! altered response of heart to induced stress + + [Term] + id: MP:0004486 + name: decreased response of heart to induced stress + def: "decrease in severity of the physiological response of the heart to induced stress such as cardiac hypertrophy due to mechanical pressure overload from aortic banding" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0004484 ! altered response of heart to induced stress + + [Term] + id: MP:0004487 + name: type I spiral ligament fibrocyte degeneration + def: "degeneration or loss of type I spiral ligament fibrocytes which occupy the region beneath the stria vascularis" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004293 ! abnormal type I spiral ligament fibrocytes + + [Term] + id: MP:0004488 + name: type II spiral ligament fibrocyte degeneration + def: "degeneration or loss of type II spiral ligament fibrocytes found in the suprastrial zone and the central area of the spiral ligament beneath the spiral prominence" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004294 ! abnormal type II spiral ligament fibrocytes + + [Term] + id: MP:0004489 + name: type III spiral ligament fibrocyte degeneration + def: "degeneration or loss of type III spiral ligament fibrocytes which form a cell layer attached to the otic capsule" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004295 ! abnormal type III spiral ligament fibrocytes + + [Term] + id: MP:0004490 + name: type IV spiral ligament fibrocyte degeneration + def: "degeneration or loss of type IV spiral ligament fibrocytes found in the triangular space inferior to the basilar crest" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004296 ! abnormal type IV spiral ligament fibrocytes + + [Term] + id: MP:0004491 + name: abnormal orientation of outer hair cell stereociliary bundles + def: "misorientation or rotation of outer hair cell (OHC) stereociliary bundles, resulting in defective planar cell polarity of the inner ear sensory epithelium " [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004399 ! abnormal cochlear outer hair cell morphology + + [Term] + id: MP:0004492 + name: abnormal orientation of inner hair cell stereociliary bundles + def: "misorientation or rotation of inner hair cell (IHC) stereociliary bundles, resulting in defective planar cell polarity of the inner ear sensory epithelium" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator] + is_a: MP:0004393 ! abnormal cochlear inner hair cell morphology + + [Term] + id: MP:0004493 + name: dilated cochlea + def: "an expansion in the volume of the cochlea" [csmith:Cynthia L. Smith_Mouse Genome Informatics Curator] + is_a: MP:0000031 ! abnormal cochlea morphology + + [Term] id: MP:0005000 name: immune tolerance *************** *** 32702,32705 **** --- 32777,32781 ---- synonym: "abnormal membrana vestibularis ductus cochlearis" EXACT [] synonym: "abnormal paries vestibularis ductus cochlearis" EXACT [] + synonym: "abnormal Reissner's membrane" EXACT [] synonym: "abnormal vestibular membrane" EXACT [] synonym: "abnormal vestibular wall of cochlear duct" EXACT [] *************** *** 32710,32713 **** --- 32786,32790 ---- name: absent Reissner membrane def: "loss of the membrane which separates the cochlear duct from the vestibular canal" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, smb:Susan M. Bello_Mouse Genome Informatics Curator] + synonym: "absent Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology *************** *** 32716,32719 **** --- 32793,32797 ---- name: detached Reissner membrane def: "partial or complete loss of connection between the membrane and the vestibular wall" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, smb:Susan M. Bello_Mouse Genome Informatics Curator] + synonym: "detached Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology *************** *** 32722,32725 **** --- 32800,32804 ---- name: collapsed Reissner membrane def: "the Reissner's membrane, which normally separates the scala media from the scala vestibuli, has collapsed onto the spiral limbus and the tectorial membrane of the organ of Corti" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, J:37461, smb:Susan M. Bello_Mouse Genome Informatics Curator] + synonym: "collapsed Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology *************** *** 32728,32731 **** --- 32807,32811 ---- name: distended Reissner membrane def: "an increase in the volume of endolymphatic fluid that results in distortion of the vestibular membrane" [anna:Anna V. Anagnostopoulos_Mouse Genome Informatics Curator, smb:Susan M. Bello_Mouse Genome Informatics Curator] + synonym: "distended Reissner's membrane" EXACT [] is_a: MP:0006021 ! abnormal Reissner membrane morphology |