[Obi-protocol-application-branch] todays call

[Bjoern P. <bp...@li...>]

We will have a call today. Agenda:

- Replacing the retired 'chebi ontology terms' with something more useful
- removing incorrect sufficient conditions (I thought I  had done that, 
but may not have committed)
- Make document for mini use cases
- update on 'objective' use:
  - rename has_ input / has_output to has_specified_input etc. to 
distinguish from non objective driven things
  - limit realization of input_role, output_role to objective driven 
processes
  - create specific objectives for high level classes (assay, material 
transformation, material separation,  data transformation, control stuff)
 
? 

It will be on Centra so that Jennifer can join.
 


>
>
> ---------- Forwarded message ----------
> From: *Alan Ruttenberg* <ala...@gm... 
> <mailto:ala...@gm...>>
> Date: Wed, Sep 24, 2008 at 8:31 AM
> Subject: define classes
> To: obi...@li... 
> <mailto:obi...@li...>
>
>
> Some notes from a quick review during release processing:
>
> ChEBI ontology can be replaced with molecular entity if there is
> nothing more specific. However, now that we have MIREOT it may be
> worth reviewing each use and importing a more specific term. If there
> isn't one, or until there is, ChEBI ontology it can be replaced with
> molecular entity.
>
> In PCR-SSCP the input would be single-stranded DNA (CHEBI:9160)
>
> Structure assay and nuclear magnetic resonance assay are determined to
> be equivalent because both have n&s conditions that say: "has_input
> some
> 'material entity' and has_output some datum".
>
> These should be, in both cases, only necessary conditions.
>
> Two other cases of N&S conditions that should only be N conditions are
> Tumor grading and Sequencing.
>
> Can we fix these before release?
>
> -Alan
>
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