[micro-manager-general] Issues with Andor sCMOS SDK V3

[Karl B. <kar...@gm...>]

1) LIBATCORE and LIBATUTILITY are not exported from the configure script.
This means no one has compiled the Andor sCMOS SDK V3 on Linux?!?!??! I
know I have, but I hardcoded the lib calls to the linker to bypass this
issue due to limited time, but this time I decided to find out the real
issue.

Failed to load hardware configuation
                                              [       ]
java.lang.Exception: Line 8: Device,Andor sCMOS Camera 1,AndorSDK3,Andor
sCMOS Camera
                                              [       ] Failed to load
device "Andor sCMOS Camera" from adapter module "AndorSDK3" [ Failed to
load device adapter "AndorSDK3" [ Failed to load module
"/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [
/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol:
AT_SetInt ] ] ]

2) ExposureProperty.cpp and ExposureProperty.h weren't included in the Make

Failed to load device "Andor sCMOS Camera" from adapter module "AndorSDK3"
[ Failed to load device adapter "AndorSDK3" [ Failed to load module
"/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [
/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol:
_ZN17TExposurePropertyD1Ev ] ]

3) Micromanager exits due to an unsupported feature. I assume the Andor
sCMOS device adapter is trying to use something that has not been released
in the latest Andor SDK V3.

terminate called after throwing an instance of
'andor::NotImplementedException'
  what():  Exception[AT_ERR_NOTIMPLEMENTED] thrown: Feature Not Implemented
Failed to load hardware configuation
                                              [       ]
java.lang.Exception: Line 8: Device,Andor sCMOS Camera 1,AndorSDK3,Andor
sCMOS Camera
                                              [       ] Failed to load
device "Andor sCMOS Camera" from adapter module "AndorSDK3" [ Failed to
load device adapter "AndorSDK3" [ Failed to load module
"/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [
/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol:
AT_SetInt ] ] ]/usr/local/bin/micromanager: line 45: 12523 Aborted
        (core dumped) /usr/java/jdk1.7.0_51/bin/java -Xmx1024M
-XX:MaxDirectMemorySize=1000G -classpath "$CLASSPATH"
-Dmmcorej.library.loading.stderr.log=yes
-Dmmcorej.library.path="/usr/local/lib/micro-manager"
-Dorg.micromanager.plugin.path="/usr/local/share/micro-manager/mmplugins"
-Dorg.micromanager.autofocus.path="/usr/local/share/micro-manager/mmautofocus"
-Dorg.micromanager.default.config.file="/usr/local/share/micro-manager/MMConfig_demo.cfg"
-Dorg.micromanager.corelog.dir=/tmp org.micromanager.MMStudio


I can submit patches but it looks like the µManager 1.4 repository has been
locked down and I can't fix issue the last issue.

What is the status of the µManager 1.4 repository?

Cheers

Karl Bellvé
Biomedical Imaging Group
Molecular Medicine
University of Massachusetts Medical School