[micro-manager-general] Issues with Andor sCMOS SDK V3
Status: Beta
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From: Karl B. <kar...@gm...> - 2015-10-22 15:48:51
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1) LIBATCORE and LIBATUTILITY are not exported from the configure script. This means no one has compiled the Andor sCMOS SDK V3 on Linux?!?!??! I know I have, but I hardcoded the lib calls to the linker to bypass this issue due to limited time, but this time I decided to find out the real issue. Failed to load hardware configuation [ ] java.lang.Exception: Line 8: Device,Andor sCMOS Camera 1,AndorSDK3,Andor sCMOS Camera [ ] Failed to load device "Andor sCMOS Camera" from adapter module "AndorSDK3" [ Failed to load device adapter "AndorSDK3" [ Failed to load module "/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [ /usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol: AT_SetInt ] ] ] 2) ExposureProperty.cpp and ExposureProperty.h weren't included in the Make Failed to load device "Andor sCMOS Camera" from adapter module "AndorSDK3" [ Failed to load device adapter "AndorSDK3" [ Failed to load module "/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [ /usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol: _ZN17TExposurePropertyD1Ev ] ] 3) Micromanager exits due to an unsupported feature. I assume the Andor sCMOS device adapter is trying to use something that has not been released in the latest Andor SDK V3. terminate called after throwing an instance of 'andor::NotImplementedException' what(): Exception[AT_ERR_NOTIMPLEMENTED] thrown: Feature Not Implemented Failed to load hardware configuation [ ] java.lang.Exception: Line 8: Device,Andor sCMOS Camera 1,AndorSDK3,Andor sCMOS Camera [ ] Failed to load device "Andor sCMOS Camera" from adapter module "AndorSDK3" [ Failed to load device adapter "AndorSDK3" [ Failed to load module "/usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0" [ /usr/local/lib/micro-manager/libmmgr_dal_AndorSDK3.so.0: undefined symbol: AT_SetInt ] ] ]/usr/local/bin/micromanager: line 45: 12523 Aborted (core dumped) /usr/java/jdk1.7.0_51/bin/java -Xmx1024M -XX:MaxDirectMemorySize=1000G -classpath "$CLASSPATH" -Dmmcorej.library.loading.stderr.log=yes -Dmmcorej.library.path="/usr/local/lib/micro-manager" -Dorg.micromanager.plugin.path="/usr/local/share/micro-manager/mmplugins" -Dorg.micromanager.autofocus.path="/usr/local/share/micro-manager/mmautofocus" -Dorg.micromanager.default.config.file="/usr/local/share/micro-manager/MMConfig_demo.cfg" -Dorg.micromanager.corelog.dir=/tmp org.micromanager.MMStudio I can submit patches but it looks like the µManager 1.4 repository has been locked down and I can't fix issue the last issue. What is the status of the µManager 1.4 repository? Cheers Karl Bellvé Biomedical Imaging Group Molecular Medicine University of Massachusetts Medical School |