mesa-users — open list for mesa comments, questions, & answers

Re: [mesa-users] [Mesa-users] Is it possible to install MESA in WSL?

[Jakub O. <ost...@as...>]

Hi,

I tried and failed miserably. SDK binaries are not compatible and there were problems with compilation of some libraries when I tried to do it manually. I don’t remember the details but I have to say it was a pretty disappointing experience.

If anyone succeed I’d be really interested to know how to do it as well.

Cheers,
Jakub

> On 5 Nov 2017, at 15:22, Antonio García Hernández <ag...@ug...> wrote:
> 
> Dear MESA users,
> 
> I was wondering if it is possible to install MESA using the new WSL (Windows Subsystem for Linux). I don't know exactly the limitations of this subsystem but I thought that it could be better than using any Virtual Machine.
> 
> Does anyone tried it?
> 
> Thank you in advance.
> Regards,
> Antonio.
> -- 
> 
> -----------------------------------------------------------------------------------------
> Dr. Antonio García Hernández
>     Post-doctoral researcher at Física Teórica y del Cosmos Dept. (University of Granada)
>     Facultad de Ciencias. 18071. Granada. Spain
>     ag...@ug... <mailto:ag...@ug...>
> -----------------------------------------------------------------------------------------

[mesa-users] updating the binary_history file

[Odette T. <ode...@gm...>]

Hi Mesa users,

I am using the  run_binary_extras to set some stopping conditions
(extras_binary_check_model), but the run terminates abruply
and I would like to save the last step when the stopping condition
is met.

I found in the 2015 summer school what I want to do in run_star_extras.f

   ! to save a profile,
      ! s% need_to_save_profiles_now = .true.
   ! to update the star log,
      ! s% need_to_update_history_now = .true.

I wonder if there is a similar choice in the binary_extras.

It might be useful to say that I am using version 9775.

Cheers, Odette.

[mesa-users] Running a code

[kaoutar l. <kao...@gm...>]

Hi mesa users

When i try to compile it is ok. But when i write ./rn i have this failure
message.

I have set mesa sdk environment.

Thanks for helping

Kao

[mesa-users] New address for mesa-users mailing list

[Josiah S. <jws...@uc...>]

Hi All,

Due to recent changes at Sourceforge, we are moving the mesa-users
mailing list to a new home.

The new address is

  mes...@li...

You should shortly (within a couple hours) receive an email on the new
mailing list.  If you do not, something has probably gone wrong and you
should re-register by visiting

  https://lists.mesastar.org/mailman/listinfo/mesa-users

and completing the form.

Best,
Josiah

Re: [mesa-users] About noises in the mass transfer rate curve

[Pablo M. <pa...@gm...>]

Hi Xiang He,

I think you missed your inlist1

Cheers

On Aug 9, 2017 9:54 PM, "贺祥" <he...@yn...> wrote:

> Hi all,
>
>     Recently , I tried to use MESA to compute the evolution of binary
> stars.
> I found that the mass transfer rate curve is always not smooth in my
> calculation.
> See the attached figures (1.pdf and 2.pdf).  I have tried to vary
> parameters (e.g. fm, fr) in the inlist,
> but the noise in the curve is still there. I would think the noise is due
> to some numerical reason.
> Is there anyone who can tell me how to reduce the noise in the curve and
> make the curve smooth?
> Thanks in advance!  The inlist files are attached.
>
>
> Cheers,
> Xiang He
>
>
> -----原始邮件-----
> *发件人:* "Josiah Schwab" <jws...@uc...>
> *发送时间:* 2017年8月10日 星期四
> *收件人:* "贺祥" <he...@yn...>
> *抄送:* "mes...@li... users" <
> mes...@li...>
> *主题:* Re: [mesa-users] MESA__not smooth problem
>
> Hello,
>
> Something appears to have gone wrong with your attachment.  I cannot see
> the png images, just some base64 encoded text.  Could you please resend
> this message?
>
> Thanks,
> Josiah
>
>
>
>
>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>

[mesa-users] About noises in the mass transfer rate curve

[贺祥 <he...@yn...>]

Hi all,

    Recently , I tried to use MESA to compute the evolution of binary stars.
I found that the mass transfer rate curve is always not smooth in my calculation.
See the attached figures (1.pdf and 2.pdf).  I have tried to vary parameters (e.g. fm, fr) in the inlist,
but the noise in the curve is still there. I would think the noise is due to some numerical reason.
Is there anyone who can tell me how to reduce the noise in the curve and make the curve smooth?
Thanks in advance!  The inlist files are attached.


Cheers,
Xiang He


-----原始邮件-----
发件人: "Josiah Schwab" <jws...@uc...>
发送时间: 2017年8月10日 星期四
收件人: "贺祥" <he...@yn...>
抄送: "mes...@li... users" <mes...@li...>
主题: Re: [mesa-users] MESA__not smooth problem


Hello,


Something appears to have gone wrong with your attachment.  I cannot see the png images, just some base64 encoded text.  Could you please resend this message?


Thanks,
Josiah

Re: [mesa-users] MESA__not smooth problem

[Josiah S. <jws...@uc...>]

Hello,

Something appears to have gone wrong with your attachment.  I cannot see
the png images, just some base64 encoded text.  Could you please resend
this message?

Thanks,
Josiah

[mesa-users] MESA__not smooth problem

[贺祥 <he...@yn...>]

Hi all,
    Recently , I found that the mass transfer radio is not smooth in my model . There are some figures in the following.

   What led to it?   Numerical reason?
   How to improve? Is there any one who can explain to me?
   Thanks in advanced.


Best wishes,


Xiang He

Re: [mesa-users] MESA__overshooting__overshoot_alpha

[Martin C. <mar...@gm...>]

Hi,

About overshooting beyond the core:
in MESA it seems to be defined as
d_ov = (f-f0)*min(Hp, r_core/overshoot_alpha)

But in the literature (eg https://arxiv.org/abs/1606.00834) we often see
d_ov = alpha_overshoot *min(Hp, r_core)
or simply
d_ov = alpha_overshoot*Hp

So "alpha_overshoot" is defined in a completely different way in MESA,
correct?

thanks,

Martin

On Fri, Jul 21, 2017 at 10:28 PM, Frank Timmes <fx...@ma...> wrote:

> as for the physical meaning of the parameter,
> you may want to consult a stellar evolution textbook,
> for example, hansen and kawaler's "stellar interiors"
> followed by a reading of the mesa instrument papers
> given on http://mesa.sourceforge.net/prereqs.html .
>
> fxt
>
>
>
>
>
> > On Jul 21, 2017, at 7:06 PM, 贺祥 <he...@yn...> wrote:
> >
> > Hi Pablo Marchant.
> >
> > Sorry, it should be " overshoot_alpha".
> >
> > Best wishes,
> >
> > Xiang He
> >
> > -----原始邮件-----
> > 发件人: "Pablo Marchant" <pa...@gm...>
> > 发送时间: 2017年7月22日 星期六
> > 收件人: "贺祥" <he...@yn...>
> > 抄送: "mes...@li..." <mes...@li...
> >
> > 主题: Re: [mesa-users] MESA__overshooting__overshoot_alpha
> >
> >
> > Hi Xiang,
> >
> > what do you mean with that? MESA has no parameter called
> overshooting_overshoot_alpha. If you're trying to set overshoot, then check
> the options available here:
> >
> > http://mesa.sourceforge.net/controls_defaults.html#overshooting
> >
> > Cheers
> >
> > On Fri, Jul 21, 2017 at 6:36 AM, 贺祥 <he...@yn...> wrote:
> > Hi all,
> >
> > I am a new user of MESA code. Recently, I  was  confused  with the
> parameter "overshooting_overshoot_alpha".  I don't fully understand the
> meaning of this parameter and what kind of value should I take for this
> paramter.  Is there any one who can explain to me? Thanks in advanced.
> >
> > Best wishes,
> >
> > Xiang He
> >
> >
> >
> >
> >
> > ------------------------------------------------------------
> ------------------
> > Check out the vibrant tech community on one of the world's most
> > engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> > _______________________________________________
> > mesa-users mailing list
> > mes...@li...
> > https://lists.sourceforge.net/lists/listinfo/mesa-users
> >
> >
> >
> >
> > --
> > Pablo Marchant Campos
> > M.Sc on Astrophysics, Universidad Católica de Chile
> > PhD on Astrophysics, Argelander-Institut für Astronomie, Universität Bonn
> >
> >
> >
> >
> > ------------------------------------------------------------
> ------------------
> > Check out the vibrant tech community on one of the world's most
> > engaging tech sites, Slashdot.org! http://sdm.link/slashdot______
> _________________________________________
> > mesa-users mailing list
> > mes...@li...
> > https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>



-- 
Martin C.

Re: [mesa-users] segmentation fault (core dumped)

[Robert F. <rjf...@as...>]

I think the confusion is that originally there was only ubuntu available so
i think that was always installed originally with the subsystem. Now a few
more distro's are available (as long as you have a new enough version of
windows 10)

But yes i'm saying with everything enabled, pre req's installed and i even
rebuilt the sdk itself, it is still buggy

Rob

On Fri, Aug 4, 2017 at 4:21 PM, amber lauer <amb...@gm...> wrote:

> I've seen guides that only require enabling the subsystem, and the full
> distro only became available recently compared to the built in components,
> but my assumption was that it would be easier with the latter.
>
> So you're saying even with the distro installed as well as the prereqs,
> it's still buggy?
>
> So even with the full "distro" installed and the
>
> On Aug 4, 2017 4:55 AM, "Robert Farmer" <rjf...@as...> wrote:
>
>> There the same thing, you first have to enable the linux subsystem on
>> windows then you can download a linux distro to use with it, i don't think
>> you can use the linux subsystem without the downloaded distro.
>>
>> Anyway the problem is not a mesa problem, its a gcc problem. For some
>> reason on windows it does not like calling functions that have been passed
>> as arguments to other functions. I'v seen this before when building mesa
>> with cygwin, that time required a patched gcc, however we are now using
>> (and need) a newer gcc so the patches don't apply.
>>
>> Rob
>>
>>
>> On Fri, Aug 4, 2017 at 4:32 AM, amber lauer <amb...@gm...> wrote:
>>
>>> I was wondering when this would come up. I was going to try it as soon
>>> as I had time, but someone has beat me to it. I'm also interested to know
>>> if it will be possible to use MESA on bash for Windows. I thought these
>>> were two different functionalities, my understanding was that bfw was a
>>> bash "software emulator" and the other was more of a virtual machine. But I
>>> see that you need to enable bfw to use the Ubuntu install, but they are
>>> packaged as two different items. So far I've not found confirmation that
>>> the Ubuntu package is really virtualized.
>>>
>>> So I'm curious exactly which packages were used in this case? Bash for
>>> Windows as well as Ubuntu? Also, were you able to "install" the prereqs?
>>>
>>>
>>> On Aug 2, 2017 8:23 AM, "Robert Farmer" <rjf...@as...> wrote:
>>>
>>> Hi
>>>
>>> The problem is you are one of the first people to try mesa on the linux
>>> subsystem for windows, as such we don't currently support it (or have even
>>> tried to get it working). I'll have a look and see if i can get something
>>> working, so in the mean time your best option for running on windows is
>>> under cygwin:
>>>
>>> https://sourceforge.net/p/mesa/mailman/message/34636241/
>>>
>>> or to install linux as a virtual machine and run mesa inside that.
>>>
>>> Rob
>>>
>>>
>>> On Wed, Aug 2, 2017 at 11:40 AM, 李二涛 <le...@sz...> wrote:
>>>
>>>>
>>>>
>>>> Dear Rob,
>>>>
>>>> I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
>>>> Please kindly find the test_quietly.txt file as attached.
>>>>
>>>> ertao
>>>>
>>>> ------------------------------
>>>> Er-Tao Li(李二涛)
>>>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>>>> University
>>>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>>>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>>>
>>>> *From:* Robert Farmer <rjf...@as...>
>>>> *Date:* 2017-08-02 17:43
>>>> *To:* 李二涛 <ert...@gm...>
>>>> *CC:* mesa-users <mes...@li...>; 李二涛深大
>>>> <le...@sz...>
>>>> *Subject:* Re: [mesa-users] segmentation fault (core dumped)
>>>> Hi
>>>>
>>>> Are you using the linux subsystem for windows? Otherwise its a little
>>>> confusing whether your machine is a linux or windows machine
>>>>
>>>> Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file
>>>>
>>>> Rob
>>>>
>>>> On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:
>>>>
>>>>> Dear MESA users,
>>>>>
>>>>> I am trying to install the mesa 9793, but I encountered the following
>>>>> problem:
>>>>>
>>>>> gfortran -fopenmp -o ../sample sample_eos.o -L../../make -le
>>>>> os -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
>>>>> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapa
>>>>> ck_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
>>>>> ../utils/build_and_test_parallel: line 56: 17804 Segmentatio
>>>>> n fault      (core dumped) ./test_quietly &> test_quietly.tx
>>>>> t
>>>>>
>>>>> /mnt/d/mesa/eos/test
>>>>> FAILED
>>>>>
>>>>>
>>>>> /mnt/d/mesa/eos
>>>>> ./build_and_test FAILED
>>>>>
>>>>> I can't solve it. Please help me
>>>>>
>>>>> The following information may be useful.
>>>>>
>>>>> - The version of MESA I am trying to build
>>>>> 9793
>>>>> - The version of the SDK I am using
>>>>> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't
>>>>> work
>>>>> - My platform (machine type, operating system, version)
>>>>> Thinkpad T430
>>>>> windows10(ubuntu 16.04)
>>>>> - uname -a
>>>>> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 1
>>>>> 4:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
>>>>> - gfortran -v
>>>>> Using built-in specs.
>>>>> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
>>>>> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86
>>>>> _64-pc-linux-gnu/5.3.1/lto-wrapper
>>>>> Target: x86_64-pc-linux-gnu
>>>>> Configured with: /root/mesasdk-src/gcc/configure CC=gcc --bu
>>>>> ild=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
>>>>> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesas
>>>>> dk --enable-languages=c,c++,fortran --disable-multilib --dis
>>>>> able-nls --disable-libsanitizer --enable-clocale=generic
>>>>> Thread model: posix
>>>>> gcc version 5.3.1 20160129 (GCC)
>>>>> - echo $MESASDK_ROOT
>>>>> /home/let/mesasdk
>>>>> - echo $PATH
>>>>> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:
>>>>> /usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
>>>>> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/
>>>>> Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
>>>>> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt
>>>>> /c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
>>>>> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management E
>>>>> ngine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
>>>>> agement Engine Components/IPT:/mnt/c/Program Files (x86)/Int
>>>>> el/Intel(R) Management Engine Components/DAL:/mnt/c/Program
>>>>> Files (x86)/Intel/Intel(R) Management Engine Components/IPT:
>>>>> /mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
>>>>> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Gho
>>>>> stscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
>>>>> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/P
>>>>> ython/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
>>>>> Programs/Python/Python36-32
>>>>>
>>>>> Thanks in advance for any help that you can offer!
>>>>>
>>>>> ------------------------------
>>>>> Er-Tao Li(李二涛)
>>>>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>>>>> University
>>>>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>>>>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>>>>
>>>>> ------------------------------------------------------------
>>>>> ------------------
>>>>> Check out the vibrant tech community on one of the world's most
>>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>>>> _______________________________________________
>>>>> mesa-users mailing list
>>>>> mes...@li...
>>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>
>>>
>>> ------------------------------------------------------------
>>> ------------------
>>> Check out the vibrant tech community on one of the world's most
>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>> _______________________________________________
>>> mesa-users mailing list
>>> mes...@li...
>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>
>>>
>>>
>>

Re: [mesa-users] segmentation fault (core dumped)

[amber l. <amb...@gm...>]

I've seen guides that only require enabling the subsystem, and the full
distro only became available recently compared to the built in components,
but my assumption was that it would be easier with the latter.

So you're saying even with the distro installed as well as the prereqs,
it's still buggy?

So even with the full "distro" installed and the

On Aug 4, 2017 4:55 AM, "Robert Farmer" <rjf...@as...> wrote:

> There the same thing, you first have to enable the linux subsystem on
> windows then you can download a linux distro to use with it, i don't think
> you can use the linux subsystem without the downloaded distro.
>
> Anyway the problem is not a mesa problem, its a gcc problem. For some
> reason on windows it does not like calling functions that have been passed
> as arguments to other functions. I'v seen this before when building mesa
> with cygwin, that time required a patched gcc, however we are now using
> (and need) a newer gcc so the patches don't apply.
>
> Rob
>
>
> On Fri, Aug 4, 2017 at 4:32 AM, amber lauer <amb...@gm...> wrote:
>
>> I was wondering when this would come up. I was going to try it as soon as
>> I had time, but someone has beat me to it. I'm also interested to know if
>> it will be possible to use MESA on bash for Windows. I thought these were
>> two different functionalities, my understanding was that bfw was a bash
>> "software emulator" and the other was more of a virtual machine. But I see
>> that you need to enable bfw to use the Ubuntu install, but they are
>> packaged as two different items. So far I've not found confirmation that
>> the Ubuntu package is really virtualized.
>>
>> So I'm curious exactly which packages were used in this case? Bash for
>> Windows as well as Ubuntu? Also, were you able to "install" the prereqs?
>>
>>
>> On Aug 2, 2017 8:23 AM, "Robert Farmer" <rjf...@as...> wrote:
>>
>> Hi
>>
>> The problem is you are one of the first people to try mesa on the linux
>> subsystem for windows, as such we don't currently support it (or have even
>> tried to get it working). I'll have a look and see if i can get something
>> working, so in the mean time your best option for running on windows is
>> under cygwin:
>>
>> https://sourceforge.net/p/mesa/mailman/message/34636241/
>>
>> or to install linux as a virtual machine and run mesa inside that.
>>
>> Rob
>>
>>
>> On Wed, Aug 2, 2017 at 11:40 AM, 李二涛 <le...@sz...> wrote:
>>
>>>
>>>
>>> Dear Rob,
>>>
>>> I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
>>> Please kindly find the test_quietly.txt file as attached.
>>>
>>> ertao
>>>
>>> ------------------------------
>>> Er-Tao Li(李二涛)
>>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>>> University
>>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>>
>>> *From:* Robert Farmer <rjf...@as...>
>>> *Date:* 2017-08-02 17:43
>>> *To:* 李二涛 <ert...@gm...>
>>> *CC:* mesa-users <mes...@li...>; 李二涛深大
>>> <le...@sz...>
>>> *Subject:* Re: [mesa-users] segmentation fault (core dumped)
>>> Hi
>>>
>>> Are you using the linux subsystem for windows? Otherwise its a little
>>> confusing whether your machine is a linux or windows machine
>>>
>>> Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file
>>>
>>> Rob
>>>
>>> On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:
>>>
>>>> Dear MESA users,
>>>>
>>>> I am trying to install the mesa 9793, but I encountered the following
>>>> problem:
>>>>
>>>> gfortran -fopenmp -o ../sample sample_eos.o -L../../make -le
>>>> os -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
>>>> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapa
>>>> ck_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
>>>> ../utils/build_and_test_parallel: line 56: 17804 Segmentatio
>>>> n fault      (core dumped) ./test_quietly &> test_quietly.tx
>>>> t
>>>>
>>>> /mnt/d/mesa/eos/test
>>>> FAILED
>>>>
>>>>
>>>> /mnt/d/mesa/eos
>>>> ./build_and_test FAILED
>>>>
>>>> I can't solve it. Please help me
>>>>
>>>> The following information may be useful.
>>>>
>>>> - The version of MESA I am trying to build
>>>> 9793
>>>> - The version of the SDK I am using
>>>> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't
>>>> work
>>>> - My platform (machine type, operating system, version)
>>>> Thinkpad T430
>>>> windows10(ubuntu 16.04)
>>>> - uname -a
>>>> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 1
>>>> 4:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
>>>> - gfortran -v
>>>> Using built-in specs.
>>>> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
>>>> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86
>>>> _64-pc-linux-gnu/5.3.1/lto-wrapper
>>>> Target: x86_64-pc-linux-gnu
>>>> Configured with: /root/mesasdk-src/gcc/configure CC=gcc --bu
>>>> ild=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
>>>> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesas
>>>> dk --enable-languages=c,c++,fortran --disable-multilib --dis
>>>> able-nls --disable-libsanitizer --enable-clocale=generic
>>>> Thread model: posix
>>>> gcc version 5.3.1 20160129 (GCC)
>>>> - echo $MESASDK_ROOT
>>>> /home/let/mesasdk
>>>> - echo $PATH
>>>> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:
>>>> /usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
>>>> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/
>>>> Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
>>>> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt
>>>> /c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
>>>> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management E
>>>> ngine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
>>>> agement Engine Components/IPT:/mnt/c/Program Files (x86)/Int
>>>> el/Intel(R) Management Engine Components/DAL:/mnt/c/Program
>>>> Files (x86)/Intel/Intel(R) Management Engine Components/IPT:
>>>> /mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
>>>> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Gho
>>>> stscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
>>>> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/P
>>>> ython/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
>>>> Programs/Python/Python36-32
>>>>
>>>> Thanks in advance for any help that you can offer!
>>>>
>>>> ------------------------------
>>>> Er-Tao Li(李二涛)
>>>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>>>> University
>>>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>>>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>>>
>>>> ------------------------------------------------------------
>>>> ------------------
>>>> Check out the vibrant tech community on one of the world's most
>>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>>> _______________________________________________
>>>> mesa-users mailing list
>>>> mes...@li...
>>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>>
>>>>
>>>
>>>
>>>
>>>
>>>
>>
>>
>> ------------------------------------------------------------
>> ------------------
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> _______________________________________________
>> mesa-users mailing list
>> mes...@li...
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>>
>

Re: [mesa-users] segmentation fault (core dumped)

[Robert F. <rjf...@as...>]

There the same thing, you first have to enable the linux subsystem on
windows then you can download a linux distro to use with it, i don't think
you can use the linux subsystem without the downloaded distro.

Anyway the problem is not a mesa problem, its a gcc problem. For some
reason on windows it does not like calling functions that have been passed
as arguments to other functions. I'v seen this before when building mesa
with cygwin, that time required a patched gcc, however we are now using
(and need) a newer gcc so the patches don't apply.

Rob


On Fri, Aug 4, 2017 at 4:32 AM, amber lauer <amb...@gm...> wrote:

> I was wondering when this would come up. I was going to try it as soon as
> I had time, but someone has beat me to it. I'm also interested to know if
> it will be possible to use MESA on bash for Windows. I thought these were
> two different functionalities, my understanding was that bfw was a bash
> "software emulator" and the other was more of a virtual machine. But I see
> that you need to enable bfw to use the Ubuntu install, but they are
> packaged as two different items. So far I've not found confirmation that
> the Ubuntu package is really virtualized.
>
> So I'm curious exactly which packages were used in this case? Bash for
> Windows as well as Ubuntu? Also, were you able to "install" the prereqs?
>
>
> On Aug 2, 2017 8:23 AM, "Robert Farmer" <rjf...@as...> wrote:
>
> Hi
>
> The problem is you are one of the first people to try mesa on the linux
> subsystem for windows, as such we don't currently support it (or have even
> tried to get it working). I'll have a look and see if i can get something
> working, so in the mean time your best option for running on windows is
> under cygwin:
>
> https://sourceforge.net/p/mesa/mailman/message/34636241/
>
> or to install linux as a virtual machine and run mesa inside that.
>
> Rob
>
>
> On Wed, Aug 2, 2017 at 11:40 AM, 李二涛 <le...@sz...> wrote:
>
>>
>>
>> Dear Rob,
>>
>> I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
>> Please kindly find the test_quietly.txt file as attached.
>>
>> ertao
>>
>> ------------------------------
>> Er-Tao Li(李二涛)
>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>> University
>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>
>> *From:* Robert Farmer <rjf...@as...>
>> *Date:* 2017-08-02 17:43
>> *To:* 李二涛 <ert...@gm...>
>> *CC:* mesa-users <mes...@li...>; 李二涛深大
>> <le...@sz...>
>> *Subject:* Re: [mesa-users] segmentation fault (core dumped)
>> Hi
>>
>> Are you using the linux subsystem for windows? Otherwise its a little
>> confusing whether your machine is a linux or windows machine
>>
>> Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file
>>
>> Rob
>>
>> On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:
>>
>>> Dear MESA users,
>>>
>>> I am trying to install the mesa 9793, but I encountered the following
>>> problem:
>>>
>>> gfortran -fopenmp -o ../sample sample_eos.o -L../../make -le
>>> os -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
>>> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapa
>>> ck_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
>>> ../utils/build_and_test_parallel: line 56: 17804 Segmentatio
>>> n fault      (core dumped) ./test_quietly &> test_quietly.tx
>>> t
>>>
>>> /mnt/d/mesa/eos/test
>>> FAILED
>>>
>>>
>>> /mnt/d/mesa/eos
>>> ./build_and_test FAILED
>>>
>>> I can't solve it. Please help me
>>>
>>> The following information may be useful.
>>>
>>> - The version of MESA I am trying to build
>>> 9793
>>> - The version of the SDK I am using
>>> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't work
>>> - My platform (machine type, operating system, version)
>>> Thinkpad T430
>>> windows10(ubuntu 16.04)
>>> - uname -a
>>> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 1
>>> 4:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
>>> - gfortran -v
>>> Using built-in specs.
>>> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
>>> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86
>>> _64-pc-linux-gnu/5.3.1/lto-wrapper
>>> Target: x86_64-pc-linux-gnu
>>> Configured with: /root/mesasdk-src/gcc/configure CC=gcc --bu
>>> ild=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
>>> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesas
>>> dk --enable-languages=c,c++,fortran --disable-multilib --dis
>>> able-nls --disable-libsanitizer --enable-clocale=generic
>>> Thread model: posix
>>> gcc version 5.3.1 20160129 (GCC)
>>> - echo $MESASDK_ROOT
>>> /home/let/mesasdk
>>> - echo $PATH
>>> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:
>>> /usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
>>> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/
>>> Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
>>> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt
>>> /c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
>>> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management E
>>> ngine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
>>> agement Engine Components/IPT:/mnt/c/Program Files (x86)/Int
>>> el/Intel(R) Management Engine Components/DAL:/mnt/c/Program
>>> Files (x86)/Intel/Intel(R) Management Engine Components/IPT:
>>> /mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
>>> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Gho
>>> stscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
>>> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/P
>>> ython/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
>>> Programs/Python/Python36-32
>>>
>>> Thanks in advance for any help that you can offer!
>>>
>>> ------------------------------
>>> Er-Tao Li(李二涛)
>>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>>> University
>>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>>
>>> ------------------------------------------------------------
>>> ------------------
>>> Check out the vibrant tech community on one of the world's most
>>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>>> _______________________________________________
>>> mesa-users mailing list
>>> mes...@li...
>>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>>
>>>
>>
>>
>>
>>
>>
>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
>

Re: [mesa-users] New MESA SDK release

[Jakub O. <ost...@as...>]

Hi Rich,

Thank you for the new version!

I’d like to point out once again that the full Xcode is not necessary for the SDK and I bet most people here don’t need it. The command 'xcode-select —install' is available on new and clean system at least from macOS 10.10.

Cheers,
Jakub

> On 4 Aug 2017, at 05:55, RICHARD H D TOWNSEND <tow...@as...> wrote:
> 
> Hi folks —
> 
> I’m pleased to announce a new release, dated 20170802, of the MESA Software Development Kit (SDK).
> 
> If you’re currently using the MESA SDK, there’s no immediate need to upgrade; but the new SDK bring a few benefits:
> 
> *) The gdb debugger and valgrind memory checker are now included with the SDK.
> 
> *) The ffmpeg movie compiler is now back in the Mac OSX version of the SDK, along with the images_to_movie.sh script — these allow the straightforward creation of movies from sequences of images.
> 
> If you don’t currently use the SDK, give it a try — it greatly simplifies installation of MESA.
> 
> To download the SDK, visit this page:
> 
> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk
> 
> cheers,
> 
> Rich
> 
> 
> 
> 
> 
> ------------------------------------------------------------------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users

Re: [mesa-users] New MESA SDK release

[Willie S. <cw...@gm...>]

Thank you, Rich.

Willie

> On Aug 3, 2017, at 22:55, RICHARD H D TOWNSEND <tow...@as...> wrote:
> 
> Hi folks —
> 
> I’m pleased to announce a new release, dated 20170802, of the MESA Software Development Kit (SDK).
> 
> If you’re currently using the MESA SDK, there’s no immediate need to upgrade; but the new SDK bring a few benefits:
> 
> *) The gdb debugger and valgrind memory checker are now included with the SDK.
> 
> *) The ffmpeg movie compiler is now back in the Mac OSX version of the SDK, along with the images_to_movie.sh script — these allow the straightforward creation of movies from sequences of images.
> 
> If you don’t currently use the SDK, give it a try — it greatly simplifies installation of MESA.
> 
> To download the SDK, visit this page:
> 
> http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk
> 
> cheers,
> 
> Rich
> 
> 
> 
> 
> 
> ------------------------------------------------------------------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users

Re: [mesa-users] new net

[amber l. <amb...@gm...>]

Do you mean

​rne20pg_to_mg22 !(
ne20(p,g)na21(p,g)mg22)

or maybe

rne20_pg_na21

?

​The case

rne20pg_to_ne21

would possibly be ne20(p,g)na21(wk)ne21

but I don't see that listed in any of the nets.

or possibly

rne20ng_ne21?

if the pg was a mistake?​ Did you copy this from another MESA net or
another nuclear network program? I don't think reaction naming protocols
are necessarily uniform in all programs.

​As a follow up, how exactly is "to" used? I see it standing in for wk, I
think, as in (rn14ag_to_o18), for (p,g) as in the case above and several
others, and possibly for (n,g) in r_O17_to_O18. I found this in NET_NOTES,
but this doesn't seem to cover all the cases. Is it just a general
placeholder for important compound or multistep reactions that has no
specific meaning in the code?

====
 other reactions
         r_<inputs>_to_<outputs>
         where <inputs> and <outputs> are iso_name's separated by '_'
         if the same iso appears 2 or more times, repeat the name that many
times.
         e.g., triple alpha is r_he4_he4_he4_to_c12
         iso's ordered by increasing Z and N. e.g.,
r_h3_be7_to_neut_h1_he4_he4

====
On Jul 24, 2017 1:19 AM, "Josiah Schwab" <jws...@uc...> wrote:

Hi Bruno,

> The reactions seem correct ...

The reaction

  ne20(p,g)ne21

doesn't make sense.  It doesn't conserve charge.

Josiah

------------------------------------------------------------
------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
mesa-users mailing list
mes...@li...
https://lists.sourceforge.net/lists/listinfo/mesa-users

[mesa-users] New MESA SDK release

[RICHARD H D T. <tow...@as...>]

Hi folks —

I’m pleased to announce a new release, dated 20170802, of the MESA Software Development Kit (SDK).

If you’re currently using the MESA SDK, there’s no immediate need to upgrade; but the new SDK bring a few benefits:

*) The gdb debugger and valgrind memory checker are now included with the SDK.

*) The ffmpeg movie compiler is now back in the Mac OSX version of the SDK, along with the images_to_movie.sh script — these allow the straightforward creation of movies from sequences of images.

If you don’t currently use the SDK, give it a try — it greatly simplifies installation of MESA.

To download the SDK, visit this page:

http://www.astro.wisc.edu/~townsend/static.php?ref=mesasdk

cheers,

Rich

Re: [mesa-users] Barring reactions from adaptive net

[amber l. <al...@ls...>]

Thanks guys, I'll try Evan's solution first since it seems easiest.

On Jul 31, 2017 10:55 AM, "Evan Bauer" <eb...@ph...> wrote:

> Is it necessary to do this in run_star_extras? I seem to recall using the
> following star_job options to do something like this once.
>
>          !### num_special_rate_factors
>          !### reaction_for_special_factor
>          !### special_rate_factor
>          ! For using other special rate factors.
>          ! `num_special_rate_factors` must be <=
> `max_num_special_rate_factors`.
>
>       num_special_rate_factors = 1
>       reaction_for_special_factor(1) = ’name_of_reaction'
>       special_rate_factor(1) = 0
>
> That should effectively turn off the reaction and accomplish what I think
> Amber is looking for.
>
> Cheers,
> Evan
>
>
> On Jul 31, 2017, at 7:58 AM, Robert Farmer <rjf...@as...> wrote:
>
> Hi
> Your best bet i think is to turn the rate off using the rate_factors array.
>
> Something like (untested) in extras_startup
>
> use net_lib
> use net_def
>
> type (Net_General_Info), pointer  :: g
>
>            do i=1,g% num_reactions
>                if(trim(reaction_Name(g% reaction_id(i)))==trim('YOUR_REACTION_HERE'))
> then
>                   s%rate_factors(i)=0d0
>                end if
>             end do
>
> s%rate_factors is an array with a multiplier for each rate in use, so by
> setting to 0 we turn the rate off.
>
> Rob
>
>
> On Mon, Jul 31, 2017 at 3:47 PM, amber lauer <al...@ls...> wrote:
>
>> Is there a way to use the adaptive net but eliminate a specific reaction?
>> If not, I'm thinking an alternative would be to just set the rate of said
>> reaction to 0, or, barring that as well, could such a thing be done using a
>> hook?
>>
>> ------------------------------------------------------------
>> ------------------
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> _______________________________________________
>> mesa-users mailing list
>> mes...@li...
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot______
> _________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>
>

Re: [mesa-users] segmentation fault (core dumped)

[amber l. <amb...@gm...>]

I was wondering when this would come up. I was going to try it as soon as I
had time, but someone has beat me to it. I'm also interested to know if it
will be possible to use MESA on bash for Windows. I thought these were two
different functionalities, my understanding was that bfw was a bash
"software emulator" and the other was more of a virtual machine. But I see
that you need to enable bfw to use the Ubuntu install, but they are
packaged as two different items. So far I've not found confirmation that
the Ubuntu package is really virtualized.

So I'm curious exactly which packages were used in this case? Bash for
Windows as well as Ubuntu? Also, were you able to "install" the prereqs?

On Aug 2, 2017 8:23 AM, "Robert Farmer" <rjf...@as...> wrote:

Hi

The problem is you are one of the first people to try mesa on the linux
subsystem for windows, as such we don't currently support it (or have even
tried to get it working). I'll have a look and see if i can get something
working, so in the mean time your best option for running on windows is
under cygwin:

https://sourceforge.net/p/mesa/mailman/message/34636241/

or to install linux as a virtual machine and run mesa inside that.

Rob


On Wed, Aug 2, 2017 at 11:40 AM, 李二涛 <le...@sz...> wrote:

>
>
> Dear Rob,
>
> I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
> Please kindly find the test_quietly.txt file as attached.
>
> ertao
>
> ------------------------------
> Er-Tao Li(李二涛)
> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
> University
> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
> Tel: 86-755-26536232. Fax: 86-755-26534374
>
> *From:* Robert Farmer <rjf...@as...>
> *Date:* 2017-08-02 17:43
> *To:* 李二涛 <ert...@gm...>
> *CC:* mesa-users <mes...@li...>; 李二涛深大
> <le...@sz...>
> *Subject:* Re: [mesa-users] segmentation fault (core dumped)
> Hi
>
> Are you using the linux subsystem for windows? Otherwise its a little
> confusing whether your machine is a linux or windows machine
>
> Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file
>
> Rob
>
> On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:
>
>> Dear MESA users,
>>
>> I am trying to install the mesa 9793, but I encountered the following
>> problem:
>>
>> gfortran -fopenmp -o ../sample sample_eos.o -L../../make -le
>> os -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
>> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapa
>> ck_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
>> ../utils/build_and_test_parallel: line 56: 17804 Segmentatio
>> n fault      (core dumped) ./test_quietly &> test_quietly.tx
>> t
>>
>> /mnt/d/mesa/eos/test
>> FAILED
>>
>>
>> /mnt/d/mesa/eos
>> ./build_and_test FAILED
>>
>> I can't solve it. Please help me
>>
>> The following information may be useful.
>>
>> - The version of MESA I am trying to build
>> 9793
>> - The version of the SDK I am using
>> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't work
>> - My platform (machine type, operating system, version)
>> Thinkpad T430
>> windows10(ubuntu 16.04)
>> - uname -a
>> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 1
>> 4:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
>> - gfortran -v
>> Using built-in specs.
>> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
>> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86
>> _64-pc-linux-gnu/5.3.1/lto-wrapper
>> Target: x86_64-pc-linux-gnu
>> Configured with: /root/mesasdk-src/gcc/configure CC=gcc --bu
>> ild=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
>> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesas
>> dk --enable-languages=c,c++,fortran --disable-multilib --dis
>> able-nls --disable-libsanitizer --enable-clocale=generic
>> Thread model: posix
>> gcc version 5.3.1 20160129 (GCC)
>> - echo $MESASDK_ROOT
>> /home/let/mesasdk
>> - echo $PATH
>> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:
>> /usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
>> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/
>> Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
>> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt
>> /c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
>> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management E
>> ngine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
>> agement Engine Components/IPT:/mnt/c/Program Files (x86)/Int
>> el/Intel(R) Management Engine Components/DAL:/mnt/c/Program
>> Files (x86)/Intel/Intel(R) Management Engine Components/IPT:
>> /mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
>> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Gho
>> stscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
>> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/P
>> ython/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
>> Programs/Python/Python36-32
>>
>> Thanks in advance for any help that you can offer!
>>
>> ------------------------------
>> Er-Tao Li(李二涛)
>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>> University
>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>
>> ------------------------------------------------------------
>> ------------------
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> _______________________________________________
>> mesa-users mailing list
>> mes...@li...
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
>
>
>
>


------------------------------------------------------------
------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
mesa-users mailing list
mes...@li...
https://lists.sourceforge.net/lists/listinfo/mesa-users

Re: [mesa-users] Inlist issue

[Bill P. <pa...@ki...>]

> On Aug 2, 2017, at 9:21 AM, Yevgeni Kissin <ki...@as...> wrote:
> 
> Bill, I don't imagine anybody is blaming you. Thank you for all your work creating and maintaining MESA.
> 


thanks — but I blame myself for everything. ;)    perhaps psychotherapy would help, but it is probably too late to change me.

-b

Re: [mesa-users] Inlist issue

[Yevgeni K. <ki...@as...>]

Hi Frank, Josiah, and Bill,

Frank, thank you for the suggestion. The inlist ran as expected after I
made that change.

Josiah, thank you for clarifying what the fundamental issue was. It was
unfortunate not to receive an error
message, which is why I was confused. But it all makes sense now.

Bill, I don't imagine anybody is blaming you. Thank you for all your work
creating and maintaining MESA.

Best,

Yevgeni Kissin
PhD
Canadian Institute for Theoretical Astrophysics
University of Toronto

On 31 July 2017 at 14:08, Frank Timmes <fx...@ma...> wrote:

> most excellent catch on "/" being a reserved character!
>
> fxt
>
>
>
> > On Jul 31, 2017, at 9:47 AM, Josiah Schwab <jws...@uc...> wrote:
> >
> > Hi All,
> >
> > I wanted to take a minute and pedagogically describe what is going on
> > here for future reference.
> >
> > The first, and most important point is that you can't do math in
> > inlists.  So as Frank says, the solution is to write out your numbers.
> >
> > Now if you were to try to do some other math operation, for example,
> >
> >  am_D_mix_factor = 1d0 + 1d0
> >
> > you'd receive an error.
> >
> > However, the character '/' ends a fortran namelist.  That is, one
> > normally writes something like
> >
> > &controls
> >
> >  am_D_mix_factor = 0.03333
> >
> > / ! end of controls namelist
> >
> > where the comment is informative, but syntactically irrelevant.
> >
> > So when you write
> >
> > &controls
> >
> >  am_D_mix_factor = 1d0/30d0
> >  some_other_option = 'something'
> >
> > / ! end of controls namelist
> >
> > the namelist ends immediately at the first '/'.  So everything beyond
> > (i.e. the 30d0 and any subsequent options) will be ignored, because it
> > is located outside of the controls namelist.
> >
> > As you found, this mistake can be insidious because it will not produce
> > an error message.  MESA will simply run with the truncated inlist.
> >
> > Josiah
>
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>

Re: [mesa-users] rn14ag_lite ! n14 + 1.5 alpha = ne20

[Bill P. <pa...@ki...>]

> On Aug 2, 2017, at 8:37 AM, Bill Paxton <pa...@ki...> wrote:
> 
> For expanded sets of reactions and isotopes, go to larger nets such as uno_extras.net
> 

as much as i enjoy the children’s card game called uno, you will have better luck with cno_extras.net

btw: i just switched to a newer version of Mail on the mac, and i didn’t notice when it “corrected” cno to uno for me without asking!   damn computers.

b

Re: [mesa-users] rn14ag_lite ! n14 + 1.5 alpha = ne20

[Bill P. <pa...@ki...>]

In the basic.net <http://basic.net/>, things are reduced to a minimum by heavy use of “composite” reactions that consist of several physical reactions as a way to avoid including the intermediate isotopes explicitly in the network.   The composite reaction rn14ag_lite simply combines various pathways that create 2 ne20 from 2 n14 + 1 he4.

For expanded sets of reactions and isotopes, go to larger nets such as uno_extras.net

Good luck,
Bill



> On Aug 2, 2017, at 1:19 AM, 李二涛 <le...@sz...> wrote:
> 
> <tl.gif>
> <spacer.gif>	<ml.gif>	<spacer.gif>
>  	
> Dear Mesa users,
>  
> I noticed that there is a line :        
>      rn14ag_lite         ! n14 + 1.5 alpha = ne20 
> in $HOME/mesa/data/net_data/nets/basic.net <http://basic.net/>.
>  
> Can someone please explain exactly what is n14 + 1.5 alpha = ne20 ?
>  
> Thanks!
>  
> Er-Tao Li(李二涛)
> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen University
> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060 
> Tel: 86-755-26536232. Fax: 86-755-26534374 
>  
>  	<dr.gif>
> 
>  
> ------------------------------------------------------------------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org <http://slashdot.org/>! http://sdm.link/slashdot_______________________________________________ <http://sdm.link/slashdot_______________________________________________>
> mesa-users mailing list
> mes...@li... <mailto:mes...@li...>
> https://lists.sourceforge.net/lists/listinfo/mesa-users <https://lists.sourceforge.net/lists/listinfo/mesa-users>

Re: [mesa-users] segmentation fault (core dumped)

[Robert F. <rjf...@as...>]

Hi

The problem is you are one of the first people to try mesa on the linux
subsystem for windows, as such we don't currently support it (or have even
tried to get it working). I'll have a look and see if i can get something
working, so in the mean time your best option for running on windows is
under cygwin:

https://sourceforge.net/p/mesa/mailman/message/34636241/

or to install linux as a virtual machine and run mesa inside that.

Rob


On Wed, Aug 2, 2017 at 11:40 AM, 李二涛 <le...@sz...> wrote:

>
>
> Dear Rob,
>
> I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
> Please kindly find the test_quietly.txt file as attached.
>
> ertao
>
> ------------------------------
> Er-Tao Li(李二涛)
> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
> University
> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
> Tel: 86-755-26536232. Fax: 86-755-26534374
>
> *From:* Robert Farmer <rjf...@as...>
> *Date:* 2017-08-02 17:43
> *To:* 李二涛 <ert...@gm...>
> *CC:* mesa-users <mes...@li...>; 李二涛深大
> <le...@sz...>
> *Subject:* Re: [mesa-users] segmentation fault (core dumped)
> Hi
>
> Are you using the linux subsystem for windows? Otherwise its a little
> confusing whether your machine is a linux or windows machine
>
> Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file
>
> Rob
>
> On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:
>
>> Dear MESA users,
>>
>> I am trying to install the mesa 9793, but I encountered the following
>> problem:
>>
>> gfortran -fopenmp -o ../sample sample_eos.o -L../../make -
>> leos -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
>> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapa
>> ck_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
>> ../utils/build_and_test_parallel: line 56: 17804 Segmentatio
>> n fault      (core dumped) ./test_quietly &> test_quietly.tx
>> t
>>
>> /mnt/d/mesa/eos/test
>> FAILED
>>
>>
>> /mnt/d/mesa/eos
>> ./build_and_test FAILED
>>
>> I can't solve it. Please help me
>>
>> The following information may be useful.
>>
>> - The version of MESA I am trying to build
>> 9793
>> - The version of the SDK I am using
>> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't work
>> - My platform (machine type, operating system, version)
>> Thinkpad T430
>> windows10(ubuntu 16.04)
>> - uname -a
>> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31
>> 14:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
>> - gfortran -v
>> Using built-in specs.
>> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
>> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86
>> _64-pc-linux-gnu/5.3.1/lto-wrapper
>> Target: x86_64-pc-linux-gnu
>> Configured with: /root/mesasdk-src/gcc/configure CC=gcc --
>> build=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
>> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesas
>> dk --enable-languages=c,c++,fortran --disable-multilib --dis
>> able-nls --disable-libsanitizer --enable-clocale=generic
>> Thread model: posix
>> gcc version 5.3.1 20160129 (GCC)
>> - echo $MESASDK_ROOT
>> /home/let/mesasdk
>> - echo $PATH
>> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:
>> /usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
>> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/
>> Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
>> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/
>> mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
>> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management
>> Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
>> agement Engine Components/IPT:/mnt/c/Program Files (x86)/Int
>> el/Intel(R) Management Engine Components/DAL:/mnt/c/Program
>> Files (x86)/Intel/Intel(R) Management Engine Components/IPT:
>> /mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
>> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Gho
>> stscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
>> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/P
>> ython/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
>> Programs/Python/Python36-32
>>
>> Thanks in advance for any help that you can offer!
>>
>> ------------------------------
>> Er-Tao Li(李二涛)
>> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
>> University
>> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
>> Tel: 86-755-26536232. Fax: 86-755-26534374
>>
>> ------------------------------------------------------------
>> ------------------
>> Check out the vibrant tech community on one of the world's most
>> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
>> _______________________________________________
>> mesa-users mailing list
>> mes...@li...
>> https://lists.sourceforge.net/lists/listinfo/mesa-users
>>
>>
>
>
>
>
>

Re: [mesa-users] segmentation fault (core dumped)

[李二涛 <le...@sz...>]

 Dear Rob,

I am trying to using the linux(Ubuntu 16.04) subsystem for windows10.
Please kindly find the test_quietly.txt file as attached.

ertao 




Er-Tao Li(李二涛)
Institute of Nuclear Technology，College of Physics & Energy, Shenzhen University
Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060 
Tel: 86-755-26536232. Fax: 86-755-26534374 

From: Robert Farmer
Date: 2017-08-02 17:43
To: 李二涛
CC: mesa-users; 李二涛深大
Subject: Re: [mesa-users] segmentation fault (core dumped)
Hi


Are you using the linux subsystem for windows? Otherwise its a little confusing whether your machine is a linux or windows machine


Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file


Rob



On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:

Dear MESA users,

I am trying to install the mesa 9793, but I encountered the following problem:

gfortran -fopenmp -o ../sample sample_eos.o -L../../make -leos -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_lapack_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
../utils/build_and_test_parallel: line 56: 17804 Segmentation fault      (core dumped) ./test_quietly &> test_quietly.tx
t

/mnt/d/mesa/eos/test
FAILED


/mnt/d/mesa/eos
./build_and_test FAILED

I can't solve it. Please help me

The following information may be useful.

The version of MESA I am trying to build
9793
The version of the SDK I am using
x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't work
My platform (machine type, operating system, version)
Thinkpad T430
windows10(ubuntu 16.04)
uname -a
Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed Dec 31 14:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
gfortran -v
Using built-in specs.
COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/x86_64-pc-linux-gnu/5.3.1/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /root/mesasdk-src/gcc/configure CC=gcc --build=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/mesasdk --enable-languages=c,c++,fortran --disable-multilib --dis
able-nls --disable-libsanitizer --enable-clocale=generic
Thread model: posix
gcc version 5.3.1 20160129 (GCC)
echo $MESASDK_ROOT
/home/let/mesasdk
echo $PATH
/home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
/local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/Program Files (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/System32/wbem:/mnt/c/Windows/System32/WindowsPowe
rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
agement Engine Components/IPT:/mnt/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program
Files (x86)/Intel/Intel(R) Management Engine Components/IPT:/mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
/c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/Ghostscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/Python/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
Programs/Python/Python36-32

Thanks in advance for any help that you can offer!




Er-Tao Li(李二涛)
Institute of Nuclear Technology，College of Physics & Energy, Shenzhen University
Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060 
Tel: 86-755-26536232. Fax: 86-755-26534374 

------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
_______________________________________________
mesa-users mailing list
mes...@li...
https://lists.sourceforge.net/lists/listinfo/mesa-users




 
 

 

Re: [mesa-users] segmentation fault (core dumped)

[Robert F. <rjf...@as...>]

Hi

Are you using the linux subsystem for windows? Otherwise its a little
confusing whether your machine is a linux or windows machine

Could you also send the file $MESA_DIR/eos/test/test_quietly.txt file

Rob

On Wed, Aug 2, 2017 at 4:39 AM, ertaoLee <ert...@gm...> wrote:

> Dear MESA users,
>
> I am trying to install the mesa 9793, but I encountered the following
> problem:
>
> gfortran -fopenmp -o ../sample sample_eos.o -L../../
> make -leos -L../../../lib -lchem -linterp_2d -linterp_1d -lnum -lf2c
> rlibm -lcrlibm -lmtx -lconst -lutils -lmesaklu `mesasdk_
> lapack_link` `mesasdk_blas_link` `mesasdk_hdf5_link`
> ../utils/build_and_test_parallel: line 56: 17804
> Segmentation fault      (core dumped) ./test_quietly &> test_quietly.tx
> t
>
> /mnt/d/mesa/eos/test
> FAILED
>
>
> /mnt/d/mesa/eos
> ./build_and_test FAILED
>
> I can't solve it. Please help me
>
> The following information may be useful.
>
> - The version of MESA I am trying to build
> 9793
> - The version of the SDK I am using
> x86_64-linux-20160129 and x86_64-linux-20150908 both tried and can't work
> - My platform (machine type, operating system, version)
> Thinkpad T430
> windows10(ubuntu 16.04)
> - uname -a
> Linux LENOVO-PC 4.4.0-43-Microsoft #1-Microsoft Wed
> Dec 31 14:42:53 PST 2014 x86_64 x86_64 x86_64 GNU/Linux
> - gfortran -v
> Using built-in specs.
> COLLECT_GCC=/home/let/mesasdk/bin/gfortran.exec
> COLLECT_LTO_WRAPPER=/home/let/mesasdk/bin/../libexec/gcc/
> x86_64-pc-linux-gnu/5.3.1/lto-wrapper
> Target: x86_64-pc-linux-gnu
> Configured with: /root/mesasdk-src/gcc/configure CC=
> gcc --build=x86_64-pc-linux-gnu --prefix=/root/mesasdk --with-gmp=/
> oot/mesasdk --with-mpfr=/root/mesasdk --with-mpc=/root/
> mesasdk --enable-languages=c,c++,fortran --disable-multilib --dis
> able-nls --disable-libsanitizer --enable-clocale=generic
> Thread model: posix
> gcc version 5.3.1 20160129 (GCC)
> - echo $MESASDK_ROOT
> /home/let/mesasdk
> - echo $PATH
> /home/let/mesasdk/bin:/home/let/mesasdk/bin:/usr/local/
> sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr
> /local/games:/mnt/c/ProgramData/Oracle/Java/javapath:/mnt/c/Program Files
> (x86)/Intel/iCLS Client:/mnt/c/Program Files/I
> ntel/iCLS Client:/mnt/c/Windows/System32:/mnt/c/Windows:/mnt/c/Windows/
> System32/wbem:/mnt/c/Windows/System32/WindowsPowe
> rShell/v1.0:/mnt/c/Program Files/Intel/Intel(R)
> Management Engine Components/DAL:/mnt/c/Program Files/Intel/Intel(R) Man
> agement Engine Components/IPT:/mnt/c/Program Files (x86)/
> Intel/Intel(R) Management Engine Components/DAL:/mnt/c/Program
> Files (x86)/Intel/Intel(R) Management Engine Components/
> IPT:/mnt/c/CTeX/MiKTeX/miktex/bin:/mnt/c/CTeX/CTeX/ctex/bin:/mnt
> /c/CTeX/CTeX/cct/bin:/mnt/c/CTeX/CTeX/ty/bin:/mnt/c/CTeX/
> Ghostscript/gs9.05/bin:/mnt/c/CTeX/GSview/gsview:/mnt/c/CTeX/Wi
> nEdt:/mnt/d/BIN:/mnt/c/Users/LENOVO/AppData/Local/Programs/
> Python/Python36-32/Scripts:/mnt/c/Users/LENOVO/AppData/Local/
> Programs/Python/Python36-32
>
> Thanks in advance for any help that you can offer!
>
> ------------------------------
> Er-Tao Li(李二涛)
> Institute of Nuclear Technology，College of Physics & Energy, Shenzhen
> University
> Nanhai Ave 3688, Shenzhen, Guangdong, P.R.China, 518060
> Tel: 86-755-26536232. Fax: 86-755-26534374
>
> ------------------------------------------------------------
> ------------------
> Check out the vibrant tech community on one of the world's most
> engaging tech sites, Slashdot.org! http://sdm.link/slashdot
> _______________________________________________
> mesa-users mailing list
> mes...@li...
> https://lists.sourceforge.net/lists/listinfo/mesa-users
>
>