Re: [maq-help] maq 0.6.8 map segmentation fault

[Raymond W. <r-...@cb...>]

Hi,

Instead of downloading the source and compiling it, you 
should consider obtaining the binaries and (if possible), 
the latest 0.7.1 version.  I'm guessing you can find it in 
Fedora's package manager.

Also, it seems maq compiled correctly so the output from 
./configure is actually not too helpful.  Can you provide 
information that is more related to your problem -- the 
command that you ran, a *very small* sample of your input 
data, etc.?

Ray


On 06/05/11 12:09, Bhanuprakash,A (ICRISAT-IN) wrote:
> I'm using maq 0.6.8 to map Illumina reads to the reference. As per the instructions I tried to install maq on fedora 14 X86_64 system and below is the o/p of the installation commands.
>
>
> [root@agl maq-0.6.8]# ./configure
> checking for a BSD-compatible install... /usr/bin/install -c
> checking whether build environment is sane... yes
...
>   /usr/bin/install -c 'scripts/maq_eval.pl' '/usr/local/bin/maq_eval.pl'
> make[1]: Nothing to be done for `install-data-am'.
> make[1]: Leaving directory `/home/ngs/Desktop/softwares/maq-0.6.8'
>
>
> I could use the options fasta2bfa,fastq2bfq but when I use map I receive a an error "Segmentation fault (core dumped)".
>
> Can anyone help me to overcome this error.