Re: [Jtreeview-users] treeview applet

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Dear Christophe,

You may need to add the Knn dendrogram view to the plugins parameter,  
i.e.

<param name="plugins"
value="edu.stanford.genetics.treeview.plugin.dendroview.DendrogramFactor 
y,edu.stanford.genetics.treeview.plugin.dendroview.KnnDendrogramFactory" 
 >

There's actually three plugins bundled into Dendrogram.jar,
edu.stanford.genetics.treeview.plugin.dendroview.DendrogramFactory
edu.stanford.genetics.treeview.plugin.dendroview.KnnDendrogramFactory
edu.stanford.genetics.treeview.plugin.dendroview.AlignmentFactory

You need to specify which ones this particular applet will need... in  
your case, you can probably leave off the DendrogramFactory. You can  
also add more plugin jars to the archive attribute of the applet tag  
if you need them. Let me know if this helps.

	-Alok

On Oct 3, 2006, at 8:22 AM, Christophe Klopp wrote:

> Hi,
>
> I hope you are or are able to redirect this question to the  
> suitable person.
>
> We want to present Kmeans data in the java treeview applet.
> We have 3 files :
> - x.cdt
> - x.kgg
> - x.jtv
>
> The applet works but does not separate the different kmean blocks
> (information from the x.kgg file).
> We tried to add the other files and a "kmeans" style to the applet  
> HTML
> code :
>
> <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.1//EN"
> "http://www.w3.org/TR/xhtml11/DTD/xhtml11.dtd">
> <html>
>   <head>
>         <meta http-equiv="Content-Type" content="text/html;
> charset=iso-8859-1" />
>       <title>Java TreeView Access  </title>
>         <link rel="SHORTCUT ICON" href="fileadmin/Sigenae/ 
> favicon.ico" />
>         <link rel="stylesheet" type="text/css"
> href="fileadmin/Sigenae/sigenae.css" />
>   </head>
>   <body>
>       <h1>Java TreeView access for SCRIBE Trout Data</h1>
>       <h2>Click on the button hereunder to access the data. </h2>
>       <hr>
>       <APPLET
> CODE="edu/stanford/genetics/treeview/applet/ButtonApplet.class"
>
> archive="TreeViewApplet.jar,nanoxml-2.2.2.jar,plugins/Dendrogram.jar"
> width=250 height=50
>         alt="Your browser understands the &lt;APPLET&gt; tag but isn't
> running the applet, for some reason."
>>
>         Your browser is completely ignoring the &lt;APPLET&gt; tag!
>         <param name="cdtFile" value="1.cdt">
>         <param name="kggFile" value="1.kgg">
>         <param name="jtvFile" value="1.jtv">
>         <param name="cdtName" value="SCRIBE trout data">
>                 <param name="plugins"
> value="edu.stanford.genetics.treeview.plugin.dendroview.DendrogramFact 
> ory">
>         <param name="style" value="kmeans">
>       </applet>
>       <hr>
>   </body>
> </html>
>
> But we got a Treview frame error 253 : no plugin to display  
> (because of
> the style).
>
> Thanks' for any example or  help.
>
> Christophe
>
>
> -- 
> ====================================================================
> = Christophe KLOPP BIA    INRA Toulouse 31326 Castanet-Tolosan     =
> = Tel: 33 5 61 28 50 36   Email: chr...@to... =
> = http://www.sigenae.org/                                          =
> ====================================================================
>