From: Michael T H. <mic...@us...> - 2003-10-30 15:13:20
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Update of /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/protein In directory sc8-pr-cvs1:/tmp/cvs-serv6972/src/org/openscience/jmol/viewer/protein Modified Files: PdbResidue.java Log Message: strands changes Index: PdbResidue.java =================================================================== RCS file: /cvsroot/jmol/Jmol/src/org/openscience/jmol/viewer/protein/PdbResidue.java,v retrieving revision 1.2 retrieving revision 1.3 diff -u -r1.2 -r1.3 --- PdbResidue.java 30 Oct 2003 14:43:36 -0000 1.2 +++ PdbResidue.java 30 Oct 2003 15:13:16 -0000 1.3 @@ -151,7 +151,7 @@ return mainchainIndices[1]; } - Atom getAtom(int i) { + public Atom getMainchainAtom(int i) { int j; if (mainchainIndices == null || (j = mainchainIndices[i]) == -1) return null; @@ -159,18 +159,19 @@ } public Atom getNitrogenAtom() { - return getAtom(0); + return getMainchainAtom(0); } public Atom getAlphaCarbonAtom() { - return getAtom(1); + return getMainchainAtom(1); } public Atom getCarboxylCarbonAtom() { - return getAtom(2); + return getMainchainAtom(2); } public Atom getCarboxylOxygenAtom() { - return getAtom(3); + return getMainchainAtom(3); } + } |