Re: [Jmol-users] Q about Jmol and CDK in same app

[Ola S. <ola...@lc...>]

Miguel,

Correct me if I'm wrong but when I look into JmolApplet.jar I cannot
find the package org.openscience.jmol.viewer including the JmolViewer.
Also, I see a lot of CDK-packages in JmolApplet.jar. I downloaded v 9.
Is this updated to v 10? Or did I misunderstand you?

Anyway, I got an email from Egon Willighagen saying that he is "...going
to write an article about how to integrate CDK and Jmol for CDK
News...". I guess he will cover all the necessary steps there.

Cheers,

   .../Ola


On Fri, 2004-10-15 at 16:16, Miguel wrote:
> > Hello,
> >
> > I'm constructing an app with Jmol and CDK. I use the precompiled
> > Jmol.jar file.
> >
> > My problem is that when I handle Molecules, my app wants to access the
> > CDK-classes and -methods in my Jmol.jar file. I want to use the latest
> > CDK (which I compile myself) but somehow my calls seem to be directed to
> > Jmol.jar instead of my CDK-*.jar.
> 
> make sure that the cdk .jar files are on your class path
> 
> > How should I solve this? Can Jmol.jar be compiled so it doesn't contain
> > cdk-classes and relies only on external cdk-jars?
> 
> Hmmm ...
> 
> I guess that there might be some cdk classes in the Jmol application.
> 
> Use JmolApplet.jar instead of Jmol.jar. Then you will only get the viewer
> with no CDK classes.
> 
> > Maybe someone could
> > explain how this can be accomplished (I am definitely no master of
> > ANT-scripts). A build-script for a minimal Jmol.jar to be used only as a
> > library for a 3:rd party app (like mine) would be the ideal!
> 
> Try using JmolApplet.jar
> 
> Let us know if this works.
> 
> 
> Miguel
> 
> 
> 
> 
> 
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