From: Philip B. <pb...@sa...> - 2004-01-26 17:48:03
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This might be a programming nightmare, but I will give it a shot. When the applet loads the file, it "knows" what atoms are present. Is it possible to make the contextual menu a listing of those atoms. Thus, if the user was working with proteins, there would be the usual C,H,O,N,S and then any metal or other hetero atoms listed from which the selection could be made. On the other hand, if the structure was an inorganic cluster, a different set of atoms would be in the selection menu. Just a thought :) Phil J. Philip Bays Department of Chemistry and Physics Saint Mary's College Notre Dame IN 46556 pb...@sa... On Jan 26, 2004, at 11:48 AM, Jan Reichert wrote: > Hi Miguel, > a snowbird is back :-) > >> >>> My latest venture is displayed at : >>> http://www.saintmarys.edu/~pbays/Complexes/Complexes.htm. >>> Obviously, we are doing some meta- ligand chemistry in my intro >>> course >>> :) >>> >> >> Looks great! >> > Yes, Jmol looks great. > >> I am going to try to drag you into the 'colors' discussion ... What >> color >> do you think that Magnesium should be? >> > In RasMol2.7 the colors are defined as shown in > http://www.imb-jena.de/~jr/VisAnPred/RasMol/Myoglobin/img18.gif > other color schemes are > http://www.imb-jena.de/~jr/VisAnPred/PSEinsightII.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEmolscript.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEmolmol.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEspdbv.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEchimera.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEprepi.gif > http://www.imb-jena.de/~jr/VisAnPred/PSEjmol.html > > this kind of green as used in PSErasmol.gif for Mg is OK for me, but I > would like to alter the RasMol scheme to > > select carbon > color [0,255,0] > > and to compensate Cl has to change to > > select chlorine > color [153,255,102] > > and additionally I prefere P in magenta > > select phosphorus > color magenta > > > >> If you can, please send me 1 paragraph (no more!) that tells me about >> the >> interesting 'bonding' of ferrocene :-) >> > metallocene: interaction of the pi-electrons from two C5H5 with the d > of the transition metal > http://www.ncl.ox.ac.uk/mom/ferrocene/ferrocene.html > > Regards, Jan > > > > ------------------------------------------------------- > The SF.Net email is sponsored by EclipseCon 2004 > Premiere Conference on Open Tools Development and Integration > See the breadth of Eclipse activity. February 3-5 in Anaheim, CA. > http://www.eclipsecon.org/osdn > _______________________________________________ > Jmol-users mailing list > Jmo...@li... > https://lists.sourceforge.net/lists/listinfo/jmol-users > > |